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Local CryoEM structure of the SARS-CoV-2 S6P(B.1.1.529) in complex with BD55-3152 Fab

Source organisms:
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

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GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF09408
Domain description: Betacoronavirus spike glycoprotein S1, receptor binding
Occurring in:
  1. Spike protein S1
The deposited structure of PDB entry 7wr8 contains 1 copy of Pfam domain PF09408 ( Betacoronavirus spike glycoprotein S1, receptor binding) in Spike protein S1. Showing 1 copy in chain A [auth R].

InterPro InterPro annotations
IPR003597
Domain description: Immunoglobulin C1-set
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR003599
Domain description: Immunoglobulin subtype
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR018548
Domain description: Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus
Occurring in:
  1. Spike protein S1
IPR003006
Domain description: Immunoglobulin/major histocompatibility complex, conserved site
Occurring in:
  1. BD55-3152H
  2. BD55-3152L
IPR036326
Domain description: Spike S1 subunit, receptor binding domain superfamily, betacoronavirus
Occurring in:
  1. Spike protein S1

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