› 7xpf

Electron Microscopy
3.13Å resolution

Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 8.5

Released:
DOI: 10.2210/pdb7xpf/pdb
PDB entry 7xpf coloured by chain, front view.
PDB entry 7xpf coloured by chain, side view.
PDB entry 7xpf coloured by chain, top view.
Source organism: Lake Sinai virus 2
Primary publication:
Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions.
Chen NC, Wang CH, Yoshimura M, Yeh YQ, Guan HH, Chuankhayan P, Lin CC, Lin PJ, Huang YC, Wakatsuki S, Ho MC, Chen CJ
OpenAccess logo Nat Commun 14 545 (2023)
PMID: 36726015
Related structures: EMD-33372

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123728 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein alpha Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 520 amino acids
Theoretical weight: 57.34 KDa
Source organism: Lake Sinai virus 2
Expression system: Escherichia coli
UniProt:
  • Canonical: F8TEV4 (Residues: 1-520; Coverage: 100%)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.13Å
Relevant EMDB volumes: EMD-33372
Expression system: Escherichia coli

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Citations

1 review citation

Recent Advances in Molecular and Immunological Diagnostic Platform for Virus Detection: A Review.
Trinh et al. (2023)
1 other article