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Structure of the Spring Viraemia of Carp Virus ribonucleoprotein Complex

Electron Microscopy
3.7Å resolution
PDB entry 7yg7 coloured by chain, front view.
PDB entry 7yg7 coloured by chain, side view.
PDB entry 7yg7 coloured by chain, top view.
Source organisms:
Assembly composition:
hetero dodecamer (preferred)
Entry contents: 1 distinct polypeptide molecule
1 distinct RNA molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Nucleoprotein and RNA
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Multimeric state: hetero dodecamer
Accessible surface area: 210154.79 Å2
Buried surface area: 71280.98 Å2
Dissociation area: 5,494.43 Å2
Dissociation energy (ΔGdiss): 67.66 kcal/mol
Dissociation entropy (TΔSdiss): 16.59 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-227939

Macromolecules

Nucleoprotein
Chains: A, B, C, D, E, F, G, H, I, J, K
Length: 414 amino acids
Theoretical weight: 46.62 KDa
Source organism: Carp sprivivirus
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q91DS3 (Residues: 5-418; Coverage: 99%)
Gene name: N
Pfam: Rhabdovirus nucleocapsid protein
InterPro:
Nucleoprotein in PDB entry 7yg7, assembly 1, front view.
Nucleoprotein in PDB entry 7yg7, assembly 1, side view.
Nucleoprotein in PDB entry 7yg7, assembly 1, top view.
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RNA chain U
Name: RNA (99-mer)
Representative chains: U
Source organism: Trichoplusia ni [7111]
Length: 99 nucleotides
Theoretical weight: 30.27 KDa
RNA (99-mer) in PDB entry 7yg7, assembly 1, front view.
RNA (99-mer) in PDB entry 7yg7, assembly 1, side view.
RNA (99-mer) in PDB entry 7yg7, assembly 1, top view.
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