› › Structure analysis

nucleotide-free DCCP:DCCP-R complex

X-ray diffraction
3.25Å resolution
PDB entry 7yyl coloured by chain, front view.
PDB entry 7yyl coloured by chain, side view.
PDB entry 7yyl coloured by chain, top view.
Source organism: Carboxydothermus hydrogenoformans Z-2901
Assembly composition:
homo dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1
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Assembly Name: Dehydratase family protein
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Multimeric state: homo dimer
Accessible surface area: 32787.51 Å2
Buried surface area: 3810.31 Å2
Dissociation area: 1,905.15 Å2
Dissociation energy (ΔGdiss): 3.37 kcal/mol
Dissociation entropy (TΔSdiss): 14.45 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-174509
Assembly 2 (preferred)
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Assembly Name: ATPase BadF/BadG/BcrA/BcrD type domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 23547.25 Å2
Buried surface area: 3096.33 Å2
Dissociation area: 1,167.47 Å2
Dissociation energy (ΔGdiss): 16.26 kcal/mol
Dissociation entropy (TΔSdiss): 13.1 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-219608
Assembly 3
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Assembly Name: Dehydratase family protein
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Multimeric state: homo dimer
Accessible surface area: 32882.76 Å2
Buried surface area: 3798.02 Å2
Dissociation area: 1,899.01 Å2
Dissociation energy (ΔGdiss): 2.13 kcal/mol
Dissociation entropy (TΔSdiss): 14.45 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-174509
Assembly 4
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Assembly Name: ATPase BadF/BadG/BcrA/BcrD type domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 23701.68 Å2
Buried surface area: 2979.8 Å2
Dissociation area: 1,238.9 Å2
Dissociation energy (ΔGdiss): 18.76 kcal/mol
Dissociation entropy (TΔSdiss): 13.12 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-219608

Macromolecules

Dehydratase family protein
Chains: A, B, C, D
Length: 422 amino acids
Theoretical weight: 47.95 KDa
Source organism: Carboxydothermus hydrogenoformans Z-2901
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q3AET9 (Residues: 1-421; Coverage: 100%)
Gene name: CHY_0487
Pfam: 2-hydroxyglutaryl-CoA dehydratase, D-component
InterPro:
Dehydratase family protein in PDB entry 7yyl, assembly 1, front view.
Dehydratase family protein in PDB entry 7yyl, assembly 1, side view.
Dehydratase family protein in PDB entry 7yyl, assembly 1, top view.
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ATPase BadF/BadG/BcrA/BcrD type domain-containing protein
Chains: E, F, G, H
Length: 243 amino acids
Theoretical weight: 26.35 KDa
Source organism: Carboxydothermus hydrogenoformans Z-2901
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q3AET8 (Residues: 1-243; Coverage: 99%)
Gene name: CHY_0488
Pfam: BadF/BadG/BcrA/BcrD ATPase family
InterPro:
ATPase BadF/BadG/BcrA/BcrD type domain-containing protein in PDB entry 7yyl, assembly 2, front view.
ATPase BadF/BadG/BcrA/BcrD type domain-containing protein in PDB entry 7yyl, assembly 2, side view.
ATPase BadF/BadG/BcrA/BcrD type domain-containing protein in PDB entry 7yyl, assembly 2, top view.
Molecule details ›

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