› › Structure analysis

Complex III2 from Yarrowia lipolytica, with decylubiquinol and antimycin A, consensus refinement

Electron Microscopy
2.1Å resolution
PDB entry 8abl coloured by chain, front view.
PDB entry 8abl coloured by chain, side view.
PDB entry 8abl coloured by chain, top view.
Source organism: Yarrowia lipolytica
Assembly composition:
hetero icosamer (preferred)
Entry contents: 10 distinct polypeptide molecules

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Multimeric state: hetero icosamer
Accessible surface area: 140298.33 Å2
Buried surface area: 113298.26 Å2
Dissociation area: 2,388.9 Å2
Dissociation energy (ΔGdiss): 19.41 kcal/mol
Dissociation entropy (TΔSdiss): 23.97 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-179430

Macromolecules

Cytochrome b
Chains: C, N
Length: 385 amino acids
Theoretical weight: 43.41 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q9B6D0 (Residues: 1-385; Coverage: 100%)
Gene names: COB, CYTB
Pfam:
InterPro:
Cytochrome b in PDB entry 8abl, assembly 1, front view.
Cytochrome b in PDB entry 8abl, assembly 1, side view.
Cytochrome b in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Cytochrome b-c1 complex subunit Rieske, mitochondrial
Chains: E, P
Length: 225 amino acids
Theoretical weight: 24.56 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6CI02 (Residues: 1-225; Coverage: 100%)
Gene name: YALI0_A02915g
Pfam:
InterPro:
Cytochrome b-c1 complex subunit Rieske, mitochondrial in PDB entry 8abl, assembly 1, front view.
Cytochrome b-c1 complex subunit Rieske, mitochondrial in PDB entry 8abl, assembly 1, side view.
Cytochrome b-c1 complex subunit Rieske, mitochondrial in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Cytochrome b-c1 complex subunit 7
Chains: G, R
Length: 128 amino acids
Theoretical weight: 14.68 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6C3K7 (Residues: 1-128; Coverage: 100%)
Gene names: QCR7, YALI0E34037g
Pfam: Ubiquinol-cytochrome C reductase complex 14kD subunit
InterPro:
Cytochrome b-c1 complex subunit 7 in PDB entry 8abl, assembly 1, front view.
Cytochrome b-c1 complex subunit 7 in PDB entry 8abl, assembly 1, side view.
Cytochrome b-c1 complex subunit 7 in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Ubiquinol-cytochrome C reductase hinge domain-containing protein
Chains: F, Q
Length: 137 amino acids
Theoretical weight: 15.79 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6C0H4 (Residues: 1-137; Coverage: 100%)
Gene name: YALI0_F24673g
Pfam: Ubiquinol-cytochrome C reductase hinge protein
InterPro:
Ubiquinol-cytochrome C reductase hinge domain-containing protein in PDB entry 8abl, assembly 1, front view.
Ubiquinol-cytochrome C reductase hinge domain-containing protein in PDB entry 8abl, assembly 1, side view.
Ubiquinol-cytochrome C reductase hinge domain-containing protein in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

mitochondrial processing peptidase
Chains: A, L
Length: 474 amino acids
Theoretical weight: 52.85 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6CGY9 (Residues: 1-474; Coverage: 100%)
Gene name: YALI0_A14806g
Pfam:
InterPro:
Mitochondrial-processing peptidase subunit beta in PDB entry 8abl, assembly 1, front view.
Mitochondrial-processing peptidase subunit beta in PDB entry 8abl, assembly 1, side view.
Mitochondrial-processing peptidase subunit beta in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Cytochrome b-c1 complex subunit 2, mitochondrial
Chains: B, M
Length: 417 amino acids
Theoretical weight: 44.28 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6C2E3 (Residues: 1-417; Coverage: 100%)
Gene names: QCR2, YALI0F08613g
Pfam:
InterPro:
Cytochrome b-c1 complex subunit 2, mitochondrial in PDB entry 8abl, assembly 1, front view.
Cytochrome b-c1 complex subunit 2, mitochondrial in PDB entry 8abl, assembly 1, side view.
Cytochrome b-c1 complex subunit 2, mitochondrial in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

quinol--cytochrome-c reductase
Chains: D, O
Length: 330 amino acids
Theoretical weight: 36.56 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6CGP7 (Residues: 1-330; Coverage: 100%)
Gene name: YALI0_A17468g
Pfam: Cytochrome C1 family
InterPro:
Cytochrome c domain-containing protein in PDB entry 8abl, assembly 1, front view.
Cytochrome c domain-containing protein in PDB entry 8abl, assembly 1, side view.
Cytochrome c domain-containing protein in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Cytochrome b-c1 complex subunit 8
Chains: H, S
Length: 93 amino acids
Theoretical weight: 10.46 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6C387 (Residues: 1-93; Coverage: 100%)
Gene name: YALI0_F01771g
Pfam: UcrQ family
InterPro:
Cytochrome b-c1 complex subunit 8 in PDB entry 8abl, assembly 1, front view.
Cytochrome b-c1 complex subunit 8 in PDB entry 8abl, assembly 1, side view.
Cytochrome b-c1 complex subunit 8 in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Complex III subunit 9
Chains: I, T
Length: 69 amino acids
Theoretical weight: 8.04 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6CG23 (Residues: 1-69; Coverage: 100%)
Gene name: YALI0_B01540g
Pfam: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
InterPro:
Complex III subunit 9 in PDB entry 8abl, assembly 1, front view.
Complex III subunit 9 in PDB entry 8abl, assembly 1, side view.
Complex III subunit 9 in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Cytochrome b-c1 complex subunit 10
Chains: J, U
Length: 82 amino acids
Theoretical weight: 9.11 KDa
Source organism: Yarrowia lipolytica
UniProt:
  • Canonical: Q6CC60 (Residues: 1-82; Coverage: 100%)
Gene name: YALI0_C12210g
Pfam: Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
InterPro: Cytochrome b-c1 complex subunit 10, fungi
Cytochrome b-c1 complex subunit 10 in PDB entry 8abl, assembly 1, front view.
Cytochrome b-c1 complex subunit 10 in PDB entry 8abl, assembly 1, side view.
Cytochrome b-c1 complex subunit 10 in PDB entry 8abl, assembly 1, top view.
Molecule details ›

Search similar proteins

Quick links