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Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Electron Microscopy
2.8Å resolution
PDB entry 8am9 coloured by chain, front view.
PDB entry 8am9 coloured by chain, side view.
PDB entry 8am9 coloured by chain, top view.
Source organisms:
Assembly composition:
hetero 56-mer (preferred)
Entry contents: 50 distinct polypeptide molecules
6 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 56-mer
Accessible surface area: 719987.46 Å2
Buried surface area: 316205.12 Å2
Dissociation area: 650.35 Å2
Dissociation energy (ΔGdiss): 0.07 kcal/mol
Dissociation entropy (TΔSdiss): 10.08 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-279464

Macromolecules

Large ribosomal subunit protein bL33
Chain: 0
Length: 55 amino acids
Theoretical weight: 6.39 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7N9 (Residues: 1-55; Coverage: 100%)
Gene names: JW3611, b3636, rpmG
Pfam: Ribosomal protein L33
InterPro:
50S ribosomal protein L33 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L33 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L33 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL34
Chain: 1
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7P5 (Residues: 1-46; Coverage: 100%)
Gene names: JW3680, b3703, rimA, rpmH, ssaF
Pfam: Ribosomal protein L34
InterPro:
50S ribosomal protein L34 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L34 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L34 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL35
Chain: 2
Length: 65 amino acids
Theoretical weight: 7.31 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7Q1 (Residues: 1-65; Coverage: 100%)
Gene names: JW1707, b1717, rpmI
Pfam: Ribosomal protein L35
InterPro:
50S ribosomal protein L35 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L35 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L35 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL36A
Chain: 3
Length: 38 amino acids
Theoretical weight: 4.38 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7Q6 (Residues: 1-38; Coverage: 100%)
Gene names: JW3261, b3299, rpmJ
Pfam: Ribosomal protein L36
InterPro:
50S ribosomal protein L36 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L36 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L36 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL31
Chain: 4
Length: 70 amino acids
Theoretical weight: 7.89 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7M9 (Residues: 1-70; Coverage: 100%)
Gene names: JW3907, b3936, rpmE
Pfam: Ribosomal protein L31
InterPro:
50S ribosomal protein L31 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L31 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L31 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS2
Chain: C
Length: 241 amino acids
Theoretical weight: 26.78 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7V0 (Residues: 1-241; Coverage: 100%)
Gene names: JW0164, b0169, rpsB
Pfam: Ribosomal protein S2
InterPro:
30S ribosomal protein S2 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S2 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S2 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS3
Chain: D
Length: 233 amino acids
Theoretical weight: 26.03 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7V3 (Residues: 1-233; Coverage: 100%)
Gene names: JW3276, b3314, rpsC
Pfam:
InterPro:
30S ribosomal protein S3 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S3 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S3 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS4
Chain: E
Length: 206 amino acids
Theoretical weight: 23.51 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7V8 (Residues: 1-206; Coverage: 100%)
Gene names: JW3258, b3296, ramA, rpsD
Pfam:
InterPro:
30S ribosomal protein S4 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S4 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S4 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS5
Chain: F
Length: 167 amino acids
Theoretical weight: 17.63 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7W1 (Residues: 1-167; Coverage: 100%)
Gene names: JW3265, b3303, rpsE, spc
Pfam:
InterPro:
30S ribosomal protein S5 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S5 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S5 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein bS6
Chain: G
Length: 135 amino acids
Theoretical weight: 15.73 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P02358 (Residues: 1-135; Coverage: 100%)
Gene names: JW4158, b4200, rpsF
Pfam: Ribosomal protein S6
InterPro:
30S ribosomal protein S6, fully modified isoform in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S6, fully modified isoform in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S6, fully modified isoform in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS7
Chain: H
Length: 179 amino acids
Theoretical weight: 20.06 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P02359 (Residues: 1-179; Coverage: 100%)
Gene names: JW3303, b3341, rpsG
Pfam: Ribosomal protein S7p/S5e
InterPro:
30S ribosomal protein S7 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S7 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S7 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS8
Chain: I
Length: 130 amino acids
Theoretical weight: 14.15 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7W7 (Residues: 1-130; Coverage: 100%)
Gene names: JW3268, b3306, rpsH
Pfam: Ribosomal protein S8
InterPro:
30S ribosomal protein S8 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S8 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S8 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS9
Chain: J
Length: 130 amino acids
Theoretical weight: 14.89 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7X3 (Residues: 1-130; Coverage: 100%)
Gene names: JW3199, b3230, rpsI
Pfam: Ribosomal protein S9/S16
InterPro:
30S ribosomal protein S9 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S9 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S9 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS10
Chain: K
Length: 103 amino acids
Theoretical weight: 11.76 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7R5 (Residues: 1-103; Coverage: 100%)
Gene names: JW3283, b3321, nusE, rpsJ
Pfam: Ribosomal protein S10p/S20e
InterPro:
30S ribosomal protein S10 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S10 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S10 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS11
Chain: L
Length: 129 amino acids
Theoretical weight: 13.87 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7R9 (Residues: 1-129; Coverage: 100%)
Gene names: JW3259, b3297, rpsK
Pfam: Ribosomal protein S11
InterPro:
30S ribosomal protein S11 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S11 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S11 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS12
Chain: M
Length: 124 amino acids
Theoretical weight: 13.77 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7S3 (Residues: 1-124; Coverage: 100%)
Gene names: JW3304, b3342, rpsL, strA
Pfam: Ribosomal protein S12/S23
InterPro:
30S ribosomal protein S12 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S12 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S12 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS13
Chain: N
Length: 118 amino acids
Theoretical weight: 13.13 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7S9 (Residues: 1-118; Coverage: 100%)
Gene names: JW3260, b3298, rpsM
Pfam: Ribosomal protein S13/S18
InterPro:
30S ribosomal protein S13 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S13 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S13 in PDB entry 8am9, assembly 1, top view.
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Small ribosomal subunit protein uS14
Chain: O
Length: 101 amino acids
Theoretical weight: 11.61 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AG59 (Residues: 1-101; Coverage: 100%)
Gene names: JW3269, b3307, rpsN
Pfam: Ribosomal protein S14p/S29e
InterPro:
30S ribosomal protein S14 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S14 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S14 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS15
Chain: P
Length: 89 amino acids
Theoretical weight: 10.29 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0ADZ4 (Residues: 1-89; Coverage: 100%)
Gene names: JW3134, b3165, rpsO, secC
Pfam: Ribosomal protein S15
InterPro:
30S ribosomal protein S15 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S15 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S15 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS16
Chain: Q
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7T3 (Residues: 1-82; Coverage: 100%)
Gene names: JW2590, b2609, rpsP
Pfam: Ribosomal protein S16
InterPro:
30S ribosomal protein S16 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S16 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S16 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS17
Chain: R
Length: 84 amino acids
Theoretical weight: 9.72 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AG63 (Residues: 1-84; Coverage: 100%)
Gene names: JW3273, b3311, neaA, rpsQ
Pfam: Ribosomal protein S17
InterPro:
30S ribosomal protein S17 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S17 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S17 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS18
Chain: S
Length: 75 amino acids
Theoretical weight: 9.01 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7T7 (Residues: 1-75; Coverage: 100%)
Gene names: JW4160, b4202, rpsR
Pfam: Ribosomal protein S18
InterPro:
30S ribosomal protein S18 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S18 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S18 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein uS19
Chain: T
Length: 92 amino acids
Theoretical weight: 10.46 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7U3 (Residues: 1-92; Coverage: 100%)
Gene names: JW3278, b3316, rpsS
Pfam: Ribosomal protein S19
InterPro:
30S ribosomal protein S19 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S19 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S19 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS20
Chain: U
Length: 87 amino acids
Theoretical weight: 9.71 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7U7 (Residues: 1-87; Coverage: 100%)
Gene names: JW0022, b0023, rpsT
Pfam: Ribosomal protein S20
InterPro:
30S ribosomal protein S20 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S20 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S20 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Small ribosomal subunit protein bS21
Chain: V
Length: 71 amino acids
Theoretical weight: 8.52 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P68679 (Residues: 1-71; Coverage: 100%)
Gene names: JW3037, b3065, rpsU
Pfam: Ribosomal protein S21
InterPro:
30S ribosomal protein S21 in PDB entry 8am9, assembly 1, front view.
30S ribosomal protein S21 in PDB entry 8am9, assembly 1, side view.
30S ribosomal protein S21 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL2
Chain: c
Length: 273 amino acids
Theoretical weight: 29.92 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P60422 (Residues: 1-273; Coverage: 100%)
Gene names: JW3279, b3317, rplB
Pfam:
InterPro:
50S ribosomal protein L2 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L2 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L2 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL3
Chain: d
Length: 209 amino acids
Theoretical weight: 22.29 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P60438 (Residues: 1-209; Coverage: 100%)
Gene names: JW3282, b3320, rplC
Pfam: Ribosomal protein L3
InterPro:
50S ribosomal protein L3 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L3 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L3 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL4
Chain: e
Length: 201 amino acids
Theoretical weight: 22.12 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P60723 (Residues: 1-201; Coverage: 100%)
Gene names: JW3281, b3319, eryA, rplD
Pfam: Ribosomal protein L4/L1 family
InterPro:
50S ribosomal protein L4 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L4 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L4 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL5
Chain: f
Length: 179 amino acids
Theoretical weight: 20.33 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P62399 (Residues: 1-179; Coverage: 100%)
Gene names: JW3270, b3308, rplE
Pfam:
InterPro:
50S ribosomal protein L5 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L5 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L5 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL6
Chain: g
Length: 177 amino acids
Theoretical weight: 18.93 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AG55 (Residues: 1-177; Coverage: 100%)
Gene names: JW3267, b3305, rplF
Pfam: Ribosomal protein L6
InterPro:
50S ribosomal protein L6 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L6 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L6 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL9
Chain: h
Length: 149 amino acids
Theoretical weight: 15.79 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7R1 (Residues: 1-149; Coverage: 100%)
Gene names: JW4161, b4203, rplI
Pfam:
InterPro:
50S ribosomal protein L9 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L9 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L9 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL13
Chain: i
Length: 142 amino acids
Theoretical weight: 16.05 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AA10 (Residues: 1-142; Coverage: 100%)
Gene names: JW3200, b3231, rplM
Pfam: Ribosomal protein L13
InterPro:
50S ribosomal protein L13 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L13 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L13 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL14
Chain: j
Length: 123 amino acids
Theoretical weight: 13.57 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0ADY3 (Residues: 1-123; Coverage: 100%)
Gene names: JW3272, b3310, rplN
Pfam: Ribosomal protein L14p/L23e
InterPro:
50S ribosomal protein L14 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L14 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L14 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL15
Chain: k
Length: 144 amino acids
Theoretical weight: 15.01 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P02413 (Residues: 1-144; Coverage: 100%)
Gene names: JW3263, b3301, rplO
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
50S ribosomal protein L15 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L15 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L15 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL16
Chain: l
Length: 136 amino acids
Theoretical weight: 15.31 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0ADY7 (Residues: 1-136; Coverage: 100%)
Gene names: JW3275, b3313, rplP
Pfam: Ribosomal protein L16p/L10e
InterPro:
50S ribosomal protein L16 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L16 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L16 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL17
Chain: m
Length: 127 amino acids
Theoretical weight: 14.39 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AG44 (Residues: 1-127; Coverage: 100%)
Gene names: JW3256, b3294, rplQ
Pfam: Ribosomal protein L17
InterPro:
50S ribosomal protein L17 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L17 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L17 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL18
Chain: n
Length: 117 amino acids
Theoretical weight: 12.79 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0C018 (Residues: 1-117; Coverage: 100%)
Gene names: JW3266, b3304, rplR
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
50S ribosomal protein L18 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L18 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L18 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL19
Chain: o
Length: 115 amino acids
Theoretical weight: 13.16 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7K6 (Residues: 1-115; Coverage: 100%)
Gene names: JW2587, b2606, rplS
Pfam: Ribosomal protein L19
InterPro:
50S ribosomal protein L19 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L19 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L19 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL20
Chain: p
Length: 118 amino acids
Theoretical weight: 13.53 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7L3 (Residues: 1-118; Coverage: 100%)
Gene names: JW1706, b1716, pdzA, rplT
Pfam: Ribosomal protein L20
InterPro:
50S ribosomal protein L20 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L20 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L20 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein bL21
Chain: q
Length: 103 amino acids
Theoretical weight: 11.59 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AG48 (Residues: 1-103; Coverage: 100%)
Gene names: JW3153, b3186, rplU
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
50S ribosomal protein L21 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L21 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L21 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL22
Chain: r
Length: 110 amino acids
Theoretical weight: 12.25 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P61175 (Residues: 1-110; Coverage: 100%)
Gene names: JW3277, b3315, eryB, rplV
Pfam: Ribosomal protein L22p/L17e
InterPro:
50S ribosomal protein L22 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L22 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L22 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL23
Chain: s
Length: 100 amino acids
Theoretical weight: 11.22 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0ADZ0 (Residues: 1-100; Coverage: 100%)
Gene names: JW3280, b3318, rplW
Pfam: Ribosomal protein L23
InterPro:
50S ribosomal protein L23 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L23 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L23 in PDB entry 8am9, assembly 1, top view.
Molecule details ›

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Large ribosomal subunit protein uL24
Chain: t
Length: 104 amino acids
Theoretical weight: 11.34 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P60624 (Residues: 1-104; Coverage: 100%)
Gene names: JW3271, b3309, rplX
Pfam:
InterPro:
50S ribosomal protein L24 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L24 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L24 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL25
Chain: u
Length: 94 amino acids
Theoretical weight: 10.71 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P68919 (Residues: 1-94; Coverage: 100%)
Gene names: JW2173, b2185, rplY
Pfam: Ribosomal L25p family
InterPro:
50S ribosomal protein L25 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L25 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L25 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL27
Chain: v
Length: 85 amino acids
Theoretical weight: 9.15 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7L8 (Residues: 1-85; Coverage: 100%)
Gene names: JW3152, b3185, rpmA
Pfam: Ribosomal L27 protein
InterPro:
50S ribosomal protein L27 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L27 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L27 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL28
Chain: w
Length: 78 amino acids
Theoretical weight: 9.03 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7M2 (Residues: 1-78; Coverage: 100%)
Gene names: JW3612, b3637, rpmB
Pfam: Ribosomal L28 family
InterPro:
50S ribosomal protein L28 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L28 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L28 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein uL29
Chain: x
Length: 63 amino acids
Theoretical weight: 7.29 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7M6 (Residues: 1-63; Coverage: 100%)
Gene names: JW3274, b3312, rpmC
Pfam: Ribosomal L29 protein
InterPro:
50S ribosomal protein L29 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L29 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L29 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein uL30
Chain: y
Length: 59 amino acids
Theoretical weight: 6.55 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0AG51 (Residues: 1-59; Coverage: 100%)
Gene names: JW3264, b3302, rpmD
Pfam: Ribosomal protein L30p/L7e
InterPro:
50S ribosomal protein L30 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L30 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L30 in PDB entry 8am9, assembly 1, top view.
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Large ribosomal subunit protein bL32
Chain: z
Length: 57 amino acids
Theoretical weight: 6.46 KDa
Source organism: Escherichia coli BW25113
UniProt:
  • Canonical: P0A7N4 (Residues: 1-57; Coverage: 100%)
Gene names: JW1075, b1089, rpmF
Pfam: Ribosomal L32p protein family
InterPro:
50S ribosomal protein L32 in PDB entry 8am9, assembly 1, front view.
50S ribosomal protein L32 in PDB entry 8am9, assembly 1, side view.
50S ribosomal protein L32 in PDB entry 8am9, assembly 1, top view.
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Drosocin
Chain: A
Length: 19 amino acids
Theoretical weight: 2.2 KDa
Source organism: Drosophila melanogaster
Expression system: Escherichia coli BW25113
UniProt:
  • Canonical: P36193 (Residues: 22-40; Coverage: 42%)
Gene names: CG10816, Dro
Drosocin1 in PDB entry 8am9, assembly 1, front view.
Drosocin1 in PDB entry 8am9, assembly 1, side view.
Drosocin1 in PDB entry 8am9, assembly 1, top view.
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RNA chain B
Name: 16S ribosomal RNA
Representative chains: B
Length: 1534 nucleotides
Theoretical weight: 497.4 KDa
Rfam: Bacterial small subunit ribosomal RNA
16S ribosomal RNA in PDB entry 8am9, assembly 1, front view.
16S ribosomal RNA in PDB entry 8am9, assembly 1, side view.
16S ribosomal RNA in PDB entry 8am9, assembly 1, top view.
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RNA chain a
Name: 23S ribosomal RNA
Representative chains: a
Length: 2903 nucleotides
Theoretical weight: 941.48 KDa
Rfam: Bacterial large subunit ribosomal RNA
23S ribosomal RNA in PDB entry 8am9, assembly 1, front view.
23S ribosomal RNA in PDB entry 8am9, assembly 1, side view.
23S ribosomal RNA in PDB entry 8am9, assembly 1, top view.
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RNA chain b
Name: 5S ribosomal RNA
Representative chains: b
Length: 120 nucleotides
Theoretical weight: 38.79 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 8am9, assembly 1, front view.
5S ribosomal RNA in PDB entry 8am9, assembly 1, side view.
5S ribosomal RNA in PDB entry 8am9, assembly 1, top view.
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RNA chain X
Name: Messenger RNA
Representative chains: X
Length: 12 nucleotides
Theoretical weight: 3.82 KDa
Messenger RNA in PDB entry 8am9, assembly 1, front view.
Messenger RNA in PDB entry 8am9, assembly 1, side view.
Messenger RNA in PDB entry 8am9, assembly 1, top view.
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RNA chain Y
Name: Initiator tRNA
Representative chains: Y
Length: 76 nucleotides
Theoretical weight: 24.54 KDa
Rfam: tRNA
Initiator tRNA in PDB entry 8am9, assembly 1, front view.
Initiator tRNA in PDB entry 8am9, assembly 1, side view.
Initiator tRNA in PDB entry 8am9, assembly 1, top view.
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RNA chain 8
Name: Leucine tRNA
Representative chains: 8
Length: 85 nucleotides
Theoretical weight: 27.42 KDa
Rfam: tRNA
Leucine tRNA in PDB entry 8am9, assembly 1, front view.
Leucine tRNA in PDB entry 8am9, assembly 1, side view.
Leucine tRNA in PDB entry 8am9, assembly 1, top view.
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