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Cryo-EM structure of the plant 60S subunit

Electron Microscopy
2.14Å resolution
PDB entry 8azw coloured by chain, front view.
PDB entry 8azw coloured by chain, side view.
PDB entry 8azw coloured by chain, top view.
Source organism: Nicotiana tabacum
Assembly composition:
hetero 46-mer (preferred)
Entry contents: 43 distinct polypeptide molecules
3 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: 60S ribosome subunit and RNA
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Multimeric state: hetero 46-mer
Accessible surface area: 605774.22 Å2
Buried surface area: 492248.58 Å2
Dissociation area: 244.51 Å2
Dissociation energy (ΔGdiss): -4.34 kcal/mol
Dissociation entropy (TΔSdiss): 9.98 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-268973

Macromolecules

60S ribosomal protein L13
Chain: D
Length: 206 amino acids
Theoretical weight: 23.6 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4CSN1 (Residues: 1-206; Coverage: 100%)
Gene name: LOC107822051
Pfam: Ribosomal protein L13e
60S ribosomal protein L13 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L13 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L13 in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein eL14 domain-containing protein
Chain: E
Length: 134 amino acids
Theoretical weight: 15.44 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4A807 (Residues: 1-134; Coverage: 100%)
Gene name: LOC107794709
Pfam: Ribosomal protein L14
Large ribosomal subunit protein eL14 domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein eL14 domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein eL14 domain-containing protein in PDB entry 8azw, assembly 1, top view.
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Ribosomal protein L15
Chain: F
Length: 204 amino acids
Theoretical weight: 24.23 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4D5P7 (Residues: 1-204; Coverage: 100%)
Gene name: LOC107826284
Pfam: Ribosomal L15
Ribosomal protein L15 in PDB entry 8azw, assembly 1, front view.
Ribosomal protein L15 in PDB entry 8azw, assembly 1, side view.
Ribosomal protein L15 in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL15/eL18 domain-containing protein
Chain: G
Length: 187 amino acids
Theoretical weight: 20.91 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4DF55 (Residues: 1-187; Coverage: 100%)
Gene names: LOC107759208, LOC107829149
Pfam: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8azw, assembly 1, top view.
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Ribosomal protein L19
Chain: H
Length: 214 amino acids
Theoretical weight: 25.06 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3X0I4 (Residues: 1-214; Coverage: 100%)
Gene name: LOC107759916
Pfam: Ribosomal protein L19e
Ribosomal protein L19 in PDB entry 8azw, assembly 1, front view.
Ribosomal protein L19 in PDB entry 8azw, assembly 1, side view.
Ribosomal protein L19 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L18a
Chain: I
Length: 178 amino acids
Theoretical weight: 21.51 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4CP52 (Residues: 1-178; Coverage: 100%)
Gene names: LOC107775758, LOC107818966, LOC107820975, LOC107821623
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
60S ribosomal protein L18a in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L18a in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L18a in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L21-1-like
Chain: J
Length: 164 amino acids
Theoretical weight: 18.72 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3XCW6 (Residues: 1-164; Coverage: 100%)
Gene name: LOC107763612
Pfam: Ribosomal protein L21e
60S ribosomal protein L21-1-like in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L21-1-like in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L21-1-like in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L22-2-like
Chain: K
Length: 127 amino acids
Theoretical weight: 14.28 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4BSU3 (Residues: 1-127; Coverage: 100%)
Gene name: LOC107811461
Pfam: Ribosomal L22e protein family
60S ribosomal protein L22-2-like in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L22-2-like in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L22-2-like in PDB entry 8azw, assembly 1, top view.
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TRASH domain-containing protein
Chain: L
Length: 164 amino acids
Theoretical weight: 18.61 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4BHF2 (Residues: 1-164; Coverage: 100%)
Gene names: LOC107781546, LOC107808292
Pfam: Ribosomal protein L24e
TRASH domain-containing protein in PDB entry 8azw, assembly 1, front view.
TRASH domain-containing protein in PDB entry 8azw, assembly 1, side view.
TRASH domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L27
Chain: M
Length: 135 amino acids
Theoretical weight: 15.72 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4AEL0 (Residues: 1-135; Coverage: 100%)
Gene name: LOC107796761
Pfam:
60S ribosomal protein L27 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L27 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L27 in PDB entry 8azw, assembly 1, top view.
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Ribosomal eL28/Mak16 domain-containing protein
Chain: N
Length: 143 amino acids
Theoretical weight: 15.95 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4D1U6 (Residues: 1-143; Coverage: 100%)
Gene name: LOC107824985
Pfam: Ribosomal L28e protein family
Ribosomal eL28/Mak16 domain-containing protein in PDB entry 8azw, assembly 1, front view.
Ribosomal eL28/Mak16 domain-containing protein in PDB entry 8azw, assembly 1, side view.
Ribosomal eL28/Mak16 domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L29
Chain: O
Length: 61 amino acids
Theoretical weight: 7.13 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3YR12 (Residues: 1-61; Coverage: 100%)
Gene name: LOC107778781
Pfam: Ribosomal L29e protein family
60S ribosomal protein L29 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L29 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L29 in PDB entry 8azw, assembly 1, top view.
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Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein
Chain: P
Length: 113 amino acids
Theoretical weight: 12.42 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3WZ09 (Residues: 1-113; Coverage: 100%)
Gene names: LOC107759448, LOC107771134
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein in PDB entry 8azw, assembly 1, front view.
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein in PDB entry 8azw, assembly 1, side view.
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L31
Chain: Q
Length: 120 amino acids
Theoretical weight: 13.89 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3Y3V5 (Residues: 1-120; Coverage: 100%)
Gene names: LOC107771890, LOC107792531
Pfam: Ribosomal protein L31e
60S ribosomal protein L31 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L31 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L31 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L32-1
Chain: R
Length: 133 amino acids
Theoretical weight: 15.67 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3Z2X4 (Residues: 1-133; Coverage: 100%)
Gene names: LOC107782359, LOC107785823
Pfam: Ribosomal protein L32
60S ribosomal protein L32-1 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L32-1 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L32-1 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L35a-3
Chain: S
Length: 112 amino acids
Theoretical weight: 12.96 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3XU79 (Residues: 1-112; Coverage: 100%)
Gene names: LOC107768641, LOC107779239, LOC107815581
Pfam: Ribosomal protein L35Ae
60S ribosomal protein L35a-3 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L35a-3 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L35a-3 in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein eL34
Chain: T
Length: 120 amino acids
Theoretical weight: 13.79 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: P41098 (Residues: 1-120; Coverage: 100%)
Gene name: RPL34
Pfam: Ribosomal protein L34e
Large ribosomal subunit protein eL34 in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein eL34 in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein eL34 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L36
Chain: U
Length: 110 amino acids
Theoretical weight: 12.36 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4D2I2 (Residues: 1-110; Coverage: 100%)
Gene name: LOC107825165
Pfam: Ribosomal protein L36e
60S ribosomal protein L36 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L36 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L36 in PDB entry 8azw, assembly 1, top view.
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Ribosomal protein L37
Chain: V
Length: 95 amino acids
Theoretical weight: 10.88 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4DN51 (Residues: 1-95; Coverage: 100%)
Gene names: LOC107784204, LOC107831585, LOC107832335
Pfam: Ribosomal protein L37e
Ribosomal protein L37 in PDB entry 8azw, assembly 1, front view.
Ribosomal protein L37 in PDB entry 8azw, assembly 1, side view.
Ribosomal protein L37 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L38
Chain: W
Length: 69 amino acids
Theoretical weight: 8.1 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4C4G8 (Residues: 1-69; Coverage: 100%)
Gene names: LOC107767504, LOC107815038
Pfam: Ribosomal L38e protein family
60S ribosomal protein L38 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L38 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L38 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L39-3
Chain: X
Length: 51 amino acids
Theoretical weight: 6.5 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3YR32 (Residues: 1-51; Coverage: 100%)
Gene names: LOC107774666, LOC107778797, LOC107781601, LOC107813331, LOC107814522
Pfam: Ribosomal L39 protein
60S ribosomal protein L39-3 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L39-3 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L39-3 in PDB entry 8azw, assembly 1, top view.
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eL40 (60S ribosomal protein L40)
Chain: Y
Length: 128 amino acids
Theoretical weight: 14.72 KDa
Source organism: Nicotiana tabacum
eL40 (60S ribosomal protein L40) in PDB entry 8azw, assembly 1, front view.
eL40 (60S ribosomal protein L40) in PDB entry 8azw, assembly 1, side view.
eL40 (60S ribosomal protein L40) in PDB entry 8azw, assembly 1, top view.
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Small ribosomal subunit protein eS32
Chain: p
Length: 25 amino acids
Theoretical weight: 3.45 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: P62121 (Residues: 1-25; Coverage: 100%)
Gene name: RPL41
Pfam: Ribosomal protein L41
Small ribosomal subunit protein eS32 in PDB entry 8azw, assembly 1, front view.
Small ribosomal subunit protein eS32 in PDB entry 8azw, assembly 1, side view.
Small ribosomal subunit protein eS32 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L44
Chain: Z
Length: 105 amino acids
Theoretical weight: 12.04 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4AVP7 (Residues: 1-105; Coverage: 100%)
Gene names: LOC107761379, LOC107767162, LOC107792576, LOC107795073, LOC107801799, LOC107802399, LOC107818115
Pfam: Ribosomal protein L44
60S ribosomal protein L44 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L44 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L44 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L37a
Chain: a
Length: 92 amino acids
Theoretical weight: 10.28 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3X5Y9 (Residues: 1-92; Coverage: 100%)
Gene names: LOC107761416, LOC107766434, LOC107769002, LOC107772948, LOC107783422, LOC107787560, LOC107803180, LOC107806598, LOC107814281
Pfam: Ribosomal L37ae protein family
60S ribosomal protein L37a in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L37a in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L37a in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL6 N-terminal domain-containing protein
Chain: b
Length: 230 amino acids
Theoretical weight: 25.54 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4B0G2 (Residues: 1-230; Coverage: 100%)
Gene name: LOC107803255
Pfam:
Large ribosomal subunit protein uL6 N-terminal domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL6 N-terminal domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL6 N-terminal domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L7a
Chain: c
Length: 258 amino acids
Theoretical weight: 29.43 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4D668 (Residues: 1-258; Coverage: 100%)
Gene name: LOC107826327
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
60S ribosomal protein L7a in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L7a in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L7a in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L13a-4
Chain: d
Length: 206 amino acids
Theoretical weight: 23.53 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4DN49 (Residues: 1-206; Coverage: 100%)
Gene name: LOC107831576
Pfam: Ribosomal protein L13
60S ribosomal protein L13a-4 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L13a-4 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L13a-4 in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L23
Chain: e
Length: 140 amino acids
Theoretical weight: 15.04 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3XSQ1 (Residues: 1-140; Coverage: 100%)
Gene names: LOC107761645, LOC107768301, LOC107774008, LOC107812746
Pfam: Ribosomal protein L14p/L23e
60S ribosomal protein L23 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L23 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L23 in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL15/eL18 domain-containing protein
Chain: f
Length: 148 amino acids
Theoretical weight: 16.58 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4BFD5 (Residues: 1-148; Coverage: 100%)
Gene name: LOC107807693
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L10-like
Chain: g
Length: 221 amino acids
Theoretical weight: 25.01 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3Z2D7 (Residues: 1-221; Coverage: 100%)
Gene name: LOC107782233
Pfam: Ribosomal protein L16p/L10e
60S ribosomal protein L10-like in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L10-like in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L10-like in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
Chain: h
Length: 301 amino acids
Theoretical weight: 34.63 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3XE16 (Residues: 1-301; Coverage: 100%)
Gene name: LOC107764090
Pfam:
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L17-1-like
Chain: j
Length: 175 amino acids
Theoretical weight: 20.14 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4CCH0 (Residues: 1-175; Coverage: 100%)
Gene name: LOC107817504
Pfam: Ribosomal protein L22p/L17e
60S ribosomal protein L17-1-like in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L17-1-like in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L17-1-like in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL23
Chain: k
Length: 154 amino acids
Theoretical weight: 17.32 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: Q07761 (Residues: 1-154; Coverage: 100%)
Gene names: RPL23A, RPL25
Pfam:
Large ribosomal subunit protein uL23 in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL23 in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL23 in PDB entry 8azw, assembly 1, top view.
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KOW domain-containing protein
Chain: m
Length: 146 amino acids
Theoretical weight: 16.75 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4DPM5 (Residues: 1-146; Coverage: 100%)
Gene name: LOC107831809
Pfam:
KOW domain-containing protein in PDB entry 8azw, assembly 1, front view.
KOW domain-containing protein in PDB entry 8azw, assembly 1, side view.
KOW domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L35-like
Chain: n
Length: 123 amino acids
Theoretical weight: 14.35 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3WY31 (Residues: 1-123; Coverage: 100%)
Gene name: LOC107759229
Pfam: Ribosomal L29 protein
60S ribosomal protein L35-like in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L35-like in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L35-like in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL2 C-terminal domain-containing protein
Chain: o
Length: 260 amino acids
Theoretical weight: 28.22 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3XXQ5 (Residues: 1-260; Coverage: 100%)
Gene names: LOC107769978, LOC107827527
Pfam:
Large ribosomal subunit protein uL2 C-terminal domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL2 C-terminal domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL2 C-terminal domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L7-4-like
Chain: q
Length: 242 amino acids
Theoretical weight: 28.15 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4A5Z2 (Residues: 1-242; Coverage: 100%)
Gene name: LOC107794124
Pfam:
60S ribosomal protein L7-4-like in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L7-4-like in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L7-4-like in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L3
Chain: r
Length: 389 amino acids
Theoretical weight: 44.51 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3ZLI9 (Residues: 1-389; Coverage: 100%)
Gene name: LOC107788247
Pfam: Ribosomal protein L3
60S ribosomal protein L3 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L3 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L3 in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL4 C-terminal domain-containing protein
Chain: s
Length: 405 amino acids
Theoretical weight: 44.71 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3X0M5 (Residues: 1-405; Coverage: 100%)
Gene name: LOC107759872
Pfam:
Large ribosomal subunit protein uL4 C-terminal domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL4 C-terminal domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL4 C-terminal domain-containing protein in PDB entry 8azw, assembly 1, top view.
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60S ribosomal protein L11-1
Chain: t
Length: 181 amino acids
Theoretical weight: 20.79 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S3XAW1 (Residues: 1-181; Coverage: 100%)
Gene name: LOC107763118
Pfam:
60S ribosomal protein L11-1 in PDB entry 8azw, assembly 1, front view.
60S ribosomal protein L11-1 in PDB entry 8azw, assembly 1, side view.
60S ribosomal protein L11-1 in PDB entry 8azw, assembly 1, top view.
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Large ribosomal subunit protein uL6 alpha-beta domain-containing protein
Chain: u
Length: 194 amino acids
Theoretical weight: 22.06 KDa
Source organism: Nicotiana tabacum
UniProt:
  • Canonical: A0A1S4C068 (Residues: 1-194; Coverage: 100%)
Gene names: LOC107767112, LOC107813756
Pfam: Ribosomal protein L6
Large ribosomal subunit protein uL6 alpha-beta domain-containing protein in PDB entry 8azw, assembly 1, front view.
Large ribosomal subunit protein uL6 alpha-beta domain-containing protein in PDB entry 8azw, assembly 1, side view.
Large ribosomal subunit protein uL6 alpha-beta domain-containing protein in PDB entry 8azw, assembly 1, top view.
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nascent chain
Chain: l
Length: 24 amino acids
Theoretical weight: 2.06 KDa
Source organism: Nicotiana tabacum
nascent chain in PDB entry 8azw, assembly 1, front view.
nascent chain in PDB entry 8azw, assembly 1, side view.
nascent chain in PDB entry 8azw, assembly 1, top view.
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RNA chain C
Name: 5S ribosomal RNA
Representative chains: C
Length: 119 nucleotides
Theoretical weight: 38.33 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 8azw, assembly 1, front view.
5S ribosomal RNA in PDB entry 8azw, assembly 1, side view.
5S ribosomal RNA in PDB entry 8azw, assembly 1, top view.
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RNA chain A
Name: 25S ribosomal RNA
Representative chains: A
Length: 3390 nucleotides
Theoretical weight: 1098.27 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
25S ribosomal RNA in PDB entry 8azw, assembly 1, front view.
25S ribosomal RNA in PDB entry 8azw, assembly 1, side view.
25S ribosomal RNA in PDB entry 8azw, assembly 1, top view.
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RNA chain B
Name: 5.8S ribosomal RNA
Representative chains: B
Length: 163 nucleotides
Theoretical weight: 52.56 KDa
Rfam: 5.8S ribosomal RNA
5.8S ribosomal RNA in PDB entry 8azw, assembly 1, front view.
5.8S ribosomal RNA in PDB entry 8azw, assembly 1, side view.
5.8S ribosomal RNA in PDB entry 8azw, assembly 1, top view.
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