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Structure of HIV-1 capsid declination in complex with CPSF6-FG peptide

Electron Microscopy
3.9Å resolution
PDB entry 8ejl coloured by chain, front view.
PDB entry 8ejl coloured by chain, side view.
PDB entry 8ejl coloured by chain, top view.
Source organisms:
Assembly composition:
hetero 30-mer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Cleavage and polyadenylation specificity factor subunit 6 and Capsid protein p24
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Multimeric state: hetero 30-mer
Accessible surface area: 142615.75 Å2
Buried surface area: 42091.25 Å2
Dissociation area: 6,398.86 Å2
Dissociation energy (ΔGdiss): 3.94 kcal/mol
Dissociation entropy (TΔSdiss): 94 kcal/mol
Symmetry number: 5
PDBe Complex ID: PDB-CPX-146185

Macromolecules

Capsid protein p24
Chains: A, L, M, N
Length: 231 amino acids
Theoretical weight: 25.63 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P12493 (Residues: 133-363; Coverage: 46%)
Gene name: gag
Pfam:
InterPro:
Capsid protein p24 in PDB entry 8ejl, assembly 1, front view.
Capsid protein p24 in PDB entry 8ejl, assembly 1, side view.
Capsid protein p24 in PDB entry 8ejl, assembly 1, top view.
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Cleavage and polyadenylation specificity factor subunit 6
Chains: Y, Z
Length: 17 amino acids
Theoretical weight: 1.71 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q16630 (Residues: 276-290; Coverage: 3%)
Gene names: CFIM68, CPSF6
Cleavage and polyadenylation specificity factor subunit 6 in PDB entry 8ejl, assembly 1, front view.
Cleavage and polyadenylation specificity factor subunit 6 in PDB entry 8ejl, assembly 1, side view.
Cleavage and polyadenylation specificity factor subunit 6 in PDB entry 8ejl, assembly 1, top view.
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