› › Function and Biology

60S subunit of the Giardia lamblia 80S ribosome

Source organism: Giardia intestinalis assemblage A
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribosome

Quick links

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. 60S ribosomal protein L7a
  2. Ribosomal protein L30
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in 60S ribosomal protein L7a. Showing 1 copy in chain H [auth G].
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein. Showing 1 copy in chain IA [auth c].

PF01780
Domain description: Ribosomal L37ae protein family
Occurring in:
  1. Ribosomal protein L37a
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01780 (Ribosomal L37ae protein family) in Ribosomal protein L37a. Showing 1 copy in chain E [auth p].

PF00935
Domain description: Ribosomal protein L44
Occurring in:
  1. Ribosomal protein L44
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00935 (Ribosomal protein L44) in Ribosomal protein L44. Showing 1 copy in chain GA [auth o].

PF01020
Domain description: Ribosomal L40e family
Occurring in:
  1. 50S ribosomal protein L40e
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01020 (Ribosomal L40e family) in 50S ribosomal protein L40e. Showing 1 copy in chain LA [auth m].

PF00240
Domain description: Ubiquitin family
Occurring in:
  1. 50S ribosomal protein L40e
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00240 (Ubiquitin family) in 50S ribosomal protein L40e. Showing 1 copy in chain LA [auth m] (this domain is out of the observed residue ranges!).

PF01781
Domain description: Ribosomal L38e protein family
Occurring in:
  1. Ribosomal L38e
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01781 (Ribosomal L38e protein family) in Ribosomal L38e. Showing 1 copy in chain FA [auth k].

PF01907
Domain description: Ribosomal protein L37e
Occurring in:
  1. Ribosomal protein L37
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01907 (Ribosomal protein L37e) in Ribosomal protein L37. Showing 1 copy in chain JA [auth j].

PF01158
Domain description: Ribosomal protein L36e
Occurring in:
  1. Ribosomal protein L36e
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01158 (Ribosomal protein L36e) in Ribosomal protein L36-1. Showing 1 copy in chain EA [auth i].

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. LSU ribosomal protein L29P/L35
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in LSU ribosomal protein L29P/L35. Showing 1 copy in chain Y [auth h].

PF01199
Domain description: Ribosomal protein L34e
Occurring in:
  1. Ribosomal protein L34
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01199 (Ribosomal protein L34e) in Large ribosomal subunit protein eL34. Showing 1 copy in chain CA [auth g].

PF01247
Domain description: Ribosomal protein L35Ae
Occurring in:
  1. Ribosomal protein L35a
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01247 (Ribosomal protein L35Ae) in Ribosomal protein L35a. Showing 1 copy in chain DA [auth f].

PF01655
Domain description: Ribosomal protein L32
Occurring in:
  1. Ribosomal protein L32
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01655 (Ribosomal protein L32) in Ribosomal protein L32. Showing 1 copy in chain BA [auth e].

PF01198
Domain description: Ribosomal protein L31e
Occurring in:
  1. Ribosomal protein L31e
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01198 (Ribosomal protein L31e) in Ribosomal protein L31e. Showing 1 copy in chain AA [auth d].

PF01779
Domain description: Ribosomal L29e protein family
Occurring in:
  1. 60S ribosomal protein L29
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01779 (Ribosomal L29e protein family) in 60S ribosomal protein L29. Showing 1 copy in chain X [auth b].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Ribosomal protein L27a
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15/eL18 domain-containing protein. Showing 1 copy in chain B [auth a].

PF01777
Domain description: Ribosomal L27e protein family
Occurring in:
  1. Ribosomal protein L27
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01777 (Ribosomal L27e protein family) in KOW domain-containing protein. Showing 1 copy in chain W [auth Z].

PF00467
Domain description: KOW motif
Occurring in:
  1. Ribosomal protein L27
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00467 (KOW motif) in KOW domain-containing protein. Showing 1 copy in chain W [auth Z].

PF16906
Domain description: Ribosomal proteins L26 eukaryotic, L24P archaeal
Occurring in:
  1. LSU ribosomal protein L24P
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF16906 (Ribosomal proteins L26 eukaryotic, L24P archaeal) in LSU ribosomal protein L24P. Showing 1 copy in chain U [auth Y].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Ribosomal protein L23A
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23 N-terminal domain-containing protein. Showing 1 copy in chain T [auth X].

PF03939
Domain description: Ribosomal protein L23, N-terminal domain
Occurring in:
  1. Ribosomal protein L23A
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF03939 (Ribosomal protein L23, N-terminal domain) in Large ribosomal subunit protein uL23 N-terminal domain-containing protein. Showing 1 copy in chain T [auth X].

PF01246
Domain description: Ribosomal protein L24e
Occurring in:
  1. Large ribosomal subunit protein eL24-related N-terminal domain-containing protein
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01246 (Ribosomal protein L24e) in Ribosomal protein L24A. Showing 1 copy in chain V [auth W].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Ribosomal protein L23
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Ribosomal protein L23. Showing 1 copy in chain R [auth V].

PF01776
Domain description: Ribosomal L22e protein family
Occurring in:
  1. Large ribosomal subunit protein eL22
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01776 (Ribosomal L22e protein family) in Large ribosomal subunit protein eL22. Showing 1 copy in chain HA [auth U].

PF01157
Domain description: Ribosomal protein L21e
Occurring in:
  1. Ribosomal protein L21
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01157 (Ribosomal protein L21e) in Ribosomal protein L21. Showing 1 copy in chain Q [auth T].

PF01775
Domain description: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Occurring in:
  1. Large ribosomal subunit protein eL20 domain-containing protein
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01775 (Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A) in Large ribosomal subunit protein eL20 domain-containing protein. Showing 1 copy in chain O [auth S].

PF01280
Domain description: Ribosomal protein L19e
Occurring in:
  1. Ribosomal protein L19
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01280 (Ribosomal protein L19e) in Large ribosomal subunit protein eL19 domain-containing protein. Showing 1 copy in chain P [auth R].

PF17135
Domain description: Ribosomal protein 60S L18 and 50S L18e
Occurring in:
  1. Ribosomal protein L18
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF17135 (Ribosomal protein 60S L18 and 50S L18e) in Large ribosomal subunit protein uL15/eL18 domain-containing protein. Showing 1 copy in chain N [auth Q].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Ribosomal protein L17
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Ribosomal protein L17. Showing 1 copy in chain S [auth P].

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Ribosomal protein L13a
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00572 (Ribosomal protein L13) in Ribosomal protein L13a. Showing 1 copy in chain J [auth O].

PF00827
Domain description: Ribosomal L15
Occurring in:
  1. Ribosomal protein L15
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00827 (Ribosomal L15) in Ribosomal protein L15. Showing 1 copy in chain M [auth N].

PF01929
Domain description: Ribosomal protein L14
Occurring in:
  1. Ribosomal protein L14
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF01929 (Ribosomal protein L14) in Large ribosomal subunit protein eL14 domain-containing protein. Showing 1 copy in chain L [auth M].

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Ribosomal protein L11
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00673 (ribosomal L5P family C-terminus) in Ribosomal protein L11. Showing 1 copy in chain I [auth J].

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Ribosomal protein L11
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00281 (Ribosomal protein L5) in Ribosomal protein L11. Showing 1 copy in chain I [auth J].

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Ribosomal protein L10
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Ribosomal protein L10. Showing 1 copy in chain D [auth I].

PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Ribosomal protein L6
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6 alpha-beta domain-containing protein. Showing 1 copy in chain G [auth H].

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Ribosomal protein L7
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00327 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30-like ferredoxin-like fold domain-containing protein. Showing 1 copy in chain Z [auth F].

PF14204
Domain description: Ribosomal L18 C-terminal region
Occurring in:
  1. Ribosomal protein L5
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF14204 (Ribosomal L18 C-terminal region) in Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein. Showing 1 copy in chain F [auth D].

PF17144
Domain description: Ribosomal large subunit proteins 60S L5, and 50S L18
Occurring in:
  1. Ribosomal protein L5
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF17144 (Ribosomal large subunit proteins 60S L5, and 50S L18) in Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein. Showing 1 copy in chain F [auth D].

PF14374
Domain description: 60S ribosomal protein L4 C-terminal domain
Occurring in:
  1. Ribosomal protein L4
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF14374 (60S ribosomal protein L4 C-terminal domain) in Large ribosomal subunit protein uL4 C-terminal domain-containing protein. Showing 1 copy in chain C.

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Ribosomal protein L4
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00573 (Ribosomal protein L4/L1 family) in Large ribosomal subunit protein uL4 C-terminal domain-containing protein. Showing 1 copy in chain C.

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. LSU ribosomal protein L3P
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in LSU ribosomal protein L3P. Showing 1 copy in chain A [auth B].

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Ribosomal protein L8
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2 C-terminal domain-containing protein. Showing 1 copy in chain MA [auth A].

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Ribosomal protein L8
The deposited structure of PDB entry 8fru contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2 C-terminal domain-containing protein. Showing 1 copy in chain MA [auth A].

Rfam RNA families (Rfam)
RF02543
Domain description: Eukaryotic large subunit ribosomal RNA
Occurring in:
  1. 28S ribosomal RNA
The deposited structure of PDB entry 8fru contains 1 copy of Rfam domain RF02543 (Eukaryotic large subunit ribosomal RNA) in 28S ribosomal RNA. Showing 1 copy in chain QA [auth 1].

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5S ribosomal RNA
The deposited structure of PDB entry 8fru contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5S ribosomal RNA. Showing 1 copy in chain OA [auth 3].

Quick links