› › Function and Biology

Yeast 40S-eIF4B - partially open conformation of the 40S head

Source organisms:
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribonucleoprotein complex

Quick links

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00400
Domain description: WD domain, G-beta repeat
Occurring in:
  1. Asc1
The deposited structure of PDB entry 8i7j contains 6 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Asc1. Showing 6 copies in chain HA [auth g].

PF01479
Domain description: S4 domain
Occurring in:
  1. 40S ribosomal protein S4
  2. KLLA0E23673p
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01479 (S4 domain) in 40S ribosomal protein S4. Showing 1 copy in chain F [auth E].
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01479 (S4 domain) in KLLA0E23673p. Showing 1 copy in chain K [auth J].

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. Small ribosomal subunit protein uS2
The deposited structure of PDB entry 8i7j contains 2 copies of Pfam domain PF00318 (Ribosomal protein S2) in Small ribosomal subunit protein uS2. Showing 2 copies in chain B [auth A].

PF05162
Domain description: Ribosomal protein L41
Occurring in:
  1. Small ribosomal subunit protein eS32A
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF05162 (Ribosomal protein L41) in Small ribosomal subunit protein eS32A. Showing 1 copy in chain IA [auth h].

PF01599
Domain description: Ribosomal protein S27a
Occurring in:
  1. Ubiquitin-ribosomal protein eS31 fusion protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01599 (Ribosomal protein S27a) in Ubiquitin-ribosomal protein eS31 fusion protein. Showing 1 copy in chain GA [auth f].

PF00240
Domain description: Ubiquitin family
Occurring in:
  1. Ubiquitin-ribosomal protein eS31 fusion protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00240 (Ubiquitin family) in Ubiquitin-ribosomal protein eS31 fusion protein. Showing 1 copy in chain GA [auth f] (this domain is out of the observed residue ranges!).

PF04758
Domain description: Ribosomal protein S30
Occurring in:
  1. 40S ribosomal protein S30
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF04758 (Ribosomal protein S30) in 40S ribosomal protein S30. Showing 1 copy in chain FA [auth e].

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Small ribosomal subunit protein uS14
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00253 (Ribosomal protein S14p/S29e) in Small ribosomal subunit protein uS14. Showing 1 copy in chain EA [auth d].

PF01200
Domain description: Ribosomal protein S28e
Occurring in:
  1. Small ribosomal subunit protein eS28
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01200 (Ribosomal protein S28e) in Small ribosomal subunit protein eS28. Showing 1 copy in chain DA [auth c].

PF01667
Domain description: Ribosomal protein S27
Occurring in:
  1. 40S ribosomal protein S27
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01667 (Ribosomal protein S27) in 40S ribosomal protein S27. Showing 1 copy in chain CA [auth b].

PF01283
Domain description: Ribosomal protein S26e
Occurring in:
  1. 40S ribosomal protein S26
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01283 (Ribosomal protein S26e) in 40S ribosomal protein S26. Showing 1 copy in chain BA [auth a].

PF03297
Domain description: S25 ribosomal protein
Occurring in:
  1. 40S ribosomal protein S25
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF03297 (S25 ribosomal protein) in 40S ribosomal protein S25. Showing 1 copy in chain AA [auth Z].

PF01282
Domain description: Ribosomal protein S24e
Occurring in:
  1. 40S ribosomal protein S24
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01282 (Ribosomal protein S24e) in 40S ribosomal protein S24. Showing 1 copy in chain Z [auth Y].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. 40S ribosomal protein S23
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in 40S ribosomal protein S23. Showing 1 copy in chain Y [auth X].

PF00410
Domain description: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00410 (Ribosomal protein S8) in Rps22a. Showing 1 copy in chain X [auth W].

PF01249
Domain description: Ribosomal protein S21e
Occurring in:
  1. Small ribosomal subunit protein eS21
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01249 (Ribosomal protein S21e ) in Small ribosomal subunit protein eS21. Showing 1 copy in chain W [auth V].

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10 domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00338 (Ribosomal protein S10p/S20e) in Small ribosomal subunit protein uS10 domain-containing protein. Showing 1 copy in chain V [auth U].

PF01090
Domain description: Ribosomal protein S19e
Occurring in:
  1. KLLA0A07194p
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01090 (Ribosomal protein S19e) in KLLA0A07194p. Showing 1 copy in chain U [auth T].

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. KLLA0B01562p
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00416 (Ribosomal protein S13/S18) in KLLA0B01562p. Showing 1 copy in chain T [auth S].

PF00833
Domain description: Ribosomal S17
Occurring in:
  1. KLLA0B01474p
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00833 (Ribosomal S17) in KLLA0B01474p. Showing 1 copy in chain S [auth R].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9. Showing 1 copy in chain R [auth Q].

PF00203
Domain description: Ribosomal protein S19
Occurring in:
  1. Rps15
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00203 (Ribosomal protein S19) in Rps15. Showing 1 copy in chain Q [auth P].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11. Showing 1 copy in chain P [auth O].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15 N-terminal domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15 N-terminal domain-containing protein. Showing 1 copy in chain O [auth N].

PF08069
Domain description: Ribosomal S13/S15 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS15 N-terminal domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF08069 (Ribosomal S13/S15 N-terminal domain) in Small ribosomal subunit protein uS15 N-terminal domain-containing protein. Showing 1 copy in chain O [auth N].

PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. 40S ribosomal protein S12
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in 40S ribosomal protein S12. Showing 1 copy in chain N [auth M].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17 N-terminal domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17 N-terminal domain-containing protein. Showing 1 copy in chain M [auth L].

PF16205
Domain description: Ribosomal_S17 N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS17 N-terminal domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF16205 (Ribosomal_S17 N-terminal) in Small ribosomal subunit protein uS17 N-terminal domain-containing protein. Showing 1 copy in chain M [auth L].

PF03501
Domain description: Plectin/S10 domain
Occurring in:
  1. Plectin/eS10 N-terminal domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF03501 (Plectin/S10 domain) in Plectin/eS10 N-terminal domain-containing protein. Showing 1 copy in chain L [auth K].

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. KLLA0E23673p
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in KLLA0E23673p. Showing 1 copy in chain K [auth J].

PF01201
Domain description: Ribosomal protein S8e
Occurring in:
  1. 40S ribosomal protein S8
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01201 (Ribosomal protein S8e) in 40S ribosomal protein S8. Showing 1 copy in chain J [auth I].

PF01251
Domain description: Ribosomal protein S7e
Occurring in:
  1. 40S ribosomal protein S7
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01251 (Ribosomal protein S7e) in 40S ribosomal protein S7. Showing 1 copy in chain I [auth H].

PF01092
Domain description: Ribosomal protein S6e
Occurring in:
  1. Small ribosomal subunit protein eS6
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01092 (Ribosomal protein S6e) in Small ribosomal subunit protein eS6. Showing 1 copy in chain H [auth G].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7 domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7 domain-containing protein. Showing 1 copy in chain G [auth F].

PF16121
Domain description: 40S ribosomal protein S4 C-terminus
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF16121 (40S ribosomal protein S4 C-terminus) in 40S ribosomal protein S4. Showing 1 copy in chain F [auth E].

PF00467
Domain description: KOW motif
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00467 (KOW motif) in 40S ribosomal protein S4. Showing 1 copy in chain F [auth E].

PF00900
Domain description: Ribosomal family S4e
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00900 (Ribosomal family S4e) in 40S ribosomal protein S4. Showing 1 copy in chain F [auth E].

PF08071
Domain description: RS4NT (NUC023) domain
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF08071 (RS4NT (NUC023) domain) in 40S ribosomal protein S4. Showing 1 copy in chain F [auth E].

PF00189
Domain description: Ribosomal protein S3, C-terminal domain
Occurring in:
  1. 40S ribosomal protein S3
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00189 (Ribosomal protein S3, C-terminal domain) in 40S ribosomal protein S3. Showing 1 copy in chain E [auth D].

PF07650
Domain description: KH domain
Occurring in:
  1. 40S ribosomal protein S3
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF07650 (KH domain) in 40S ribosomal protein S3. Showing 1 copy in chain E [auth D].

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. S5 DRBM domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF03719 (Ribosomal protein S5, C-terminal domain) in S5 DRBM domain-containing protein. Showing 1 copy in chain D [auth C].

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. S5 DRBM domain-containing protein
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF00333 (Ribosomal protein S5, N-terminal domain) in S5 DRBM domain-containing protein. Showing 1 copy in chain D [auth C].

PF01015
Domain description: Ribosomal S3Ae family
Occurring in:
  1. Small ribosomal subunit protein eS1
The deposited structure of PDB entry 8i7j contains 1 copy of Pfam domain PF01015 (Ribosomal S3Ae family) in Small ribosomal subunit protein eS1. Showing 1 copy in chain C [auth B].

Rfam RNA family (Rfam)
RF01960
Domain description: Eukaryotic small subunit ribosomal RNA
Occurring in:
  1. RNA (1780-MER)

Quick links