Structure analysis

Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA

Electron Microscopy
2.99Å resolution
Source organism: Potato virus Y strain NTN
Assembly composition:
hetero 56-mer (preferred)
Entry contents: 1 distinct polypeptide molecule
1 distinct RNA molecule

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 56-mer
Accessible surface area: 240441.58 Å2
Buried surface area: 287412.4 Å2
Dissociation area: 6,039.59 Å2
Dissociation energy (ΔGdiss): 76.76 kcal/mol
Dissociation entropy (TΔSdiss): 16 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-239011

Macromolecules

Chains: Aa, Ac, Ae, Ag, Ai, Ak, Am, Ao, Aq, As, Au, Aw, Ay, Ba, Bc, Be, Bg, Bi, Bk, Bm, Bo, Bq, Bs, Bu, Bw, By, Ca, Cc
Length: 267 amino acids
Theoretical weight: 29.94 KDa
Source organism: Potato virus Y strain NTN
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0A7DIV0 (Residues: 1-267; Coverage: 100%)
Pfam: Potyvirus coat protein

Search similar proteins

Name: RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Representative chains: Ab, Ad, Af, Ah, Aj, Al, An, Ap, Ar, At, Av, Ax, Az, Bb, Bd, Bf, Bh, Bj, Bl, Bn, Bp, Br, Bt, Bv, Bx, Bz, Cb, Cd
Source organism: Potato virus Y strain NTN [122280]
Expression system: Escherichia coli BL21(DE3) [469008]
Length: 5 nucleotides
Theoretical weight: 1.49 KDa

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