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Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Electron Microscopy
2.55Å resolution
PDB entry 8pvk coloured by chain, front view.
PDB entry 8pvk coloured by chain, side view.
PDB entry 8pvk coloured by chain, top view.
Source organism: Thermochaetoides thermophila DSM 1495
Assembly composition:
hetero 60-mer (preferred)
Entry contents: 55 distinct polypeptide molecules
4 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: 60S ribosome subunit and C2H2-type domain-containing protein and CP-type G domain-containing protein and DUF2423 domain-containing protein and Eukaryo...
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Multimeric state: hetero 60-mer
Accessible surface area: 798929.0 Å2
Buried surface area: 535851.49 Å2
Dissociation area: 3,090.14 Å2
Dissociation energy (ΔGdiss): 17.32 kcal/mol
Dissociation entropy (TΔSdiss): 16.2 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-236226

Macromolecules

Utp30
Chain: CB
Length: 391 amino acids
Theoretical weight: 43.7 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S7X0 (Residues: 1-391; Coverage: 100%)
Gene name: CTHT_0037280
Pfam: Ribosomal protein L1p/L10e family
Utp30 in PDB entry 8pvk, assembly 1, front view.
Utp30 in PDB entry 8pvk, assembly 1, side view.
Utp30 in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein uL10
Chain: CF
Length: 270 amino acids
Theoretical weight: 30.53 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S616 (Residues: 1-270; Coverage: 100%)
Gene name: CTHT_0025680
Pfam:
Large ribosomal subunit protein uL10 in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein uL10 in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein uL10 in PDB entry 8pvk, assembly 1, top view.
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Nucleolar GTP-binding protein 1
Chain: CH
Length: 661 amino acids
Theoretical weight: 75.62 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S8F1 (Residues: 1-661; Coverage: 100%)
Gene names: CTHT_0029660, NOG1
Pfam:
Nucleolar GTP-binding protein 1 in PDB entry 8pvk, assembly 1, front view.
Nucleolar GTP-binding protein 1 in PDB entry 8pvk, assembly 1, side view.
Nucleolar GTP-binding protein 1 in PDB entry 8pvk, assembly 1, top view.
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RRM domain-containing protein
Chain: CI
Length: 414 amino acids
Theoretical weight: 45.88 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S1H0 (Residues: 1-414; Coverage: 100%)
Gene name: CTHT_0013570
Pfam: RNA recognition motif
RRM domain-containing protein in PDB entry 8pvk, assembly 1, front view.
RRM domain-containing protein in PDB entry 8pvk, assembly 1, side view.
RRM domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Pescadillo homolog
Chain: CJ
Length: 679 amino acids
Theoretical weight: 77.17 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SHX6 (Residues: 1-679; Coverage: 100%)
Gene names: CTHT_0073720, NOP7
Pfam:
Pescadillo homolog in PDB entry 8pvk, assembly 1, front view.
Pescadillo homolog in PDB entry 8pvk, assembly 1, side view.
Pescadillo homolog in PDB entry 8pvk, assembly 1, top view.
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Ribosome biogenesis protein NSA2 homolog
Chain: CK
Length: 261 amino acids
Theoretical weight: 29.72 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S081 (Residues: 1-261; Coverage: 100%)
Gene name: CTHT_0009080
Pfam: Ribosomal protein S8e
Ribosome biogenesis protein NSA2 homolog in PDB entry 8pvk, assembly 1, front view.
Ribosome biogenesis protein NSA2 homolog in PDB entry 8pvk, assembly 1, side view.
Ribosome biogenesis protein NSA2 homolog in PDB entry 8pvk, assembly 1, top view.
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CP-type G domain-containing protein
Chain: CL
Length: 558 amino acids
Theoretical weight: 61.48 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SEW3 (Residues: 1-558; Coverage: 100%)
Gene name: CTHT_0059920
Pfam:
CP-type G domain-containing protein in PDB entry 8pvk, assembly 1, front view.
CP-type G domain-containing protein in PDB entry 8pvk, assembly 1, side view.
CP-type G domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein l7-like protein
Chains: CM, LF
Length: 249 amino acids
Theoretical weight: 28.82 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SFL0 (Residues: 1-249; Coverage: 100%)
Gene name: CTHT_0071220
Pfam:
60S ribosomal protein l7-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein l7-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein l7-like protein in PDB entry 8pvk, assembly 1, top view.
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Eukaryotic translation initiation factor 6
Chain: CN
Length: 246 amino acids
Theoretical weight: 26.47 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S683 (Residues: 1-246; Coverage: 100%)
Gene names: CTHT_0025830, TIF6
Pfam: eIF-6 family
Eukaryotic translation initiation factor 6 in PDB entry 8pvk, assembly 1, front view.
Eukaryotic translation initiation factor 6 in PDB entry 8pvk, assembly 1, side view.
Eukaryotic translation initiation factor 6 in PDB entry 8pvk, assembly 1, top view.
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DUF2423 domain-containing protein
Chain: CO
Length: 120 amino acids
Theoretical weight: 13.26 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SHK0 (Residues: 1-120; Coverage: 100%)
Gene name: CTHT_0070290
Pfam: YBL028C ribosome biogenesis factor, N-terminal domain
DUF2423 domain-containing protein in PDB entry 8pvk, assembly 1, front view.
DUF2423 domain-containing protein in PDB entry 8pvk, assembly 1, side view.
DUF2423 domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Ribosome biogenesis protein RLP24
Chain: CQ
Length: 225 amino acids
Theoretical weight: 26.43 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S497 (Residues: 1-225; Coverage: 100%)
Gene name: CTHT_0039400
Pfam: Ribosomal protein L24e
Ribosome biogenesis protein RLP24 in PDB entry 8pvk, assembly 1, front view.
Ribosome biogenesis protein RLP24 in PDB entry 8pvk, assembly 1, side view.
Ribosome biogenesis protein RLP24 in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein eL28
Chain: Lq
Length: 147 amino acids
Theoretical weight: 15.96 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SHJ6 (Residues: 1-147; Coverage: 100%)
Gene name: CTHT_0070250
Pfam: Ribosomal L28e protein family
Ribosomal eL28/Mak16 domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Ribosomal eL28/Mak16 domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Ribosomal eL28/Mak16 domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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C2H2-type domain-containing protein
Chain: Cb
Length: 117 amino acids
Theoretical weight: 13.71 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SB32 (Residues: 1-117; Coverage: 100%)
Gene name: CTHT_0048710
Pfam: Zinc-finger double-stranded RNA-binding
C2H2-type domain-containing protein in PDB entry 8pvk, assembly 1, front view.
C2H2-type domain-containing protein in PDB entry 8pvk, assembly 1, side view.
C2H2-type domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Nucleolar GTP-binding protein 2
Chain: Cd
Length: 627 amino acids
Theoretical weight: 70.31 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SBX1 (Residues: 1-627; Coverage: 100%)
Gene name: CTHT_0055100
Pfam:
Nucleolar GTP-binding protein 2 in PDB entry 8pvk, assembly 1, front view.
Nucleolar GTP-binding protein 2 in PDB entry 8pvk, assembly 1, side view.
Nucleolar GTP-binding protein 2 in PDB entry 8pvk, assembly 1, top view.
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Ribosome biogenesis protein NOP53
Chain: Ce
Length: 443 amino acids
Theoretical weight: 50.98 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S495 (Residues: 1-443; Coverage: 100%)
Gene name: CTHT_0039380
Pfam: Nop53 (60S ribosomal biogenesis)
Ribosome biogenesis protein NOP53 in PDB entry 8pvk, assembly 1, front view.
Ribosome biogenesis protein NOP53 in PDB entry 8pvk, assembly 1, side view.
Ribosome biogenesis protein NOP53 in PDB entry 8pvk, assembly 1, top view.
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Ribosome production factor 2 homolog
Chain: Cf
Length: 350 amino acids
Theoretical weight: 39.93 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SF80 (Residues: 1-350; Coverage: 100%)
Gene name: CTHT_0061110
Pfam: Brix domain
Ribosome production factor 2 homolog in PDB entry 8pvk, assembly 1, front view.
Ribosome production factor 2 homolog in PDB entry 8pvk, assembly 1, side view.
Ribosome production factor 2 homolog in PDB entry 8pvk, assembly 1, top view.
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Ribosome biogenesis regulatory protein
Chain: Cg
Length: 202 amino acids
Theoretical weight: 22.82 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SCH6 (Residues: 1-202; Coverage: 100%)
Gene name: CTHT_0057260
Pfam: Ribosome biogenesis regulatory protein (RRS1)
Ribosome biogenesis regulatory protein in PDB entry 8pvk, assembly 1, front view.
Ribosome biogenesis regulatory protein in PDB entry 8pvk, assembly 1, side view.
Ribosome biogenesis regulatory protein in PDB entry 8pvk, assembly 1, top view.
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Ribosome assembly protein 4
Chain: Ch
Length: 517 amino acids
Theoretical weight: 57.62 KDa
Source organism: Thermochaetoides thermophila DSM 1495
Expression system: Chaetomium thermophilum var. thermophilum DSM 1495
UniProt:
  • Canonical: G0SC29 (Residues: 1-517; Coverage: 100%)
Gene name: CTHT_0055700
Pfam: WD domain, G-beta repeat
Ribosome assembly protein 4 in PDB entry 8pvk, assembly 1, front view.
Ribosome assembly protein 4 in PDB entry 8pvk, assembly 1, side view.
Ribosome assembly protein 4 in PDB entry 8pvk, assembly 1, top view.
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rRNA-processing protein
Chain: Cz
Length: 123 amino acids
Theoretical weight: 14.71 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SCP3 (Residues: 1-123; Coverage: 100%)
Gene name: CTHT_0057940
Pfam: Cgr1 family
rRNA-processing protein in PDB entry 8pvk, assembly 1, front view.
rRNA-processing protein in PDB entry 8pvk, assembly 1, side view.
rRNA-processing protein in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein uL2 C-terminal domain-containing protein
Chain: LA
Length: 254 amino acids
Theoretical weight: 27.6 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S4P8 (Residues: 1-254; Coverage: 100%)
Gene name: CTHT_0023090
Pfam:
Large ribosomal subunit protein uL2 C-terminal domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein uL2 C-terminal domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein uL2 C-terminal domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L3-like protein
Chain: LB
Length: 392 amino acids
Theoretical weight: 44.46 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0RXW1 (Residues: 1-392; Coverage: 100%)
Gene name: CTHT_0004490
Pfam: Ribosomal protein L3
60S ribosomal protein L3-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L3-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L3-like protein in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein uL4 C-terminal domain-containing protein
Chain: LC
Length: 365 amino acids
Theoretical weight: 39.44 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SFC3 (Residues: 1-365; Coverage: 100%)
Gene name: CTHT_0061540
Pfam:
Large ribosomal subunit protein uL4 C-terminal domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein uL4 C-terminal domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein uL4 C-terminal domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
Chain: LD
Length: 304 amino acids
Theoretical weight: 35.03 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SEG2 (Residues: 1-304; Coverage: 100%)
Gene name: CTHT_0063640
Pfam:
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L6
Chain: LE
Length: 200 amino acids
Theoretical weight: 22.13 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S0D6 (Residues: 1-200; Coverage: 100%)
Gene name: CTHT_0009640
Pfam: Ribosomal protein L6e
60S ribosomal protein L6 in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L6 in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L6 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L8
Chain: LG
Length: 262 amino acids
Theoretical weight: 29.74 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SAJ9 (Residues: 1-262; Coverage: 100%)
Gene name: CTHT_0042550
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
60S ribosomal protein L8 in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L8 in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L8 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein l9-like protein
Chain: LH
Length: 229 amino acids
Theoretical weight: 25.87 KDa
Source organism: Thermochaetoides thermophila DSM 1495
60S ribosomal protein l9-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein l9-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein l9-like protein in PDB entry 8pvk, assembly 1, top view.
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Putative ribosomal protein
Chain: LJ
Length: 173 amino acids
Theoretical weight: 20.12 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SHQ2 (Residues: 1-173; Coverage: 100%)
Gene name: CTHT_0072970
Pfam:
Putative ribosomal protein in PDB entry 8pvk, assembly 1, front view.
Putative ribosomal protein in PDB entry 8pvk, assembly 1, side view.
Putative ribosomal protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L12-like protein
Chain: LK
Length: 165 amino acids
Theoretical weight: 17.8 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SGH8 (Residues: 1-165; Coverage: 100%)
Gene name: CTHT_0066380
Pfam:
60S ribosomal protein L12-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L12-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L12-like protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L13
Chain: LL
Length: 213 amino acids
Theoretical weight: 24.19 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S992 (Residues: 1-213; Coverage: 100%)
Gene name: CTHT_0045000
Pfam: Ribosomal protein L13e
60S ribosomal protein L13 in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L13 in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L13 in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein eL14 domain-containing protein
Chain: LM
Length: 142 amino acids
Theoretical weight: 16.11 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S1R0 (Residues: 1-142; Coverage: 100%)
Gene name: CTHT_0014490
Pfam: Ribosomal protein L14
Large ribosomal subunit protein eL14 domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein eL14 domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein eL14 domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Ribosomal protein L15
Chain: LN
Length: 203 amino acids
Theoretical weight: 24.31 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0RZ88 (Residues: 1-203; Coverage: 100%)
Gene name: CTHT_0002100
Pfam: Ribosomal L15
Ribosomal protein L15 in PDB entry 8pvk, assembly 1, front view.
Ribosomal protein L15 in PDB entry 8pvk, assembly 1, side view.
Ribosomal protein L15 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L16-like protein
Chain: LO
Length: 204 amino acids
Theoretical weight: 22.99 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SH61 (Residues: 1-204; Coverage: 100%)
Gene name: CTHT_0068840
Pfam: Ribosomal protein L13
60S ribosomal protein L16-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L16-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L16-like protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein l17-like protein
Chain: LP
Length: 187 amino acids
Theoretical weight: 21.07 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SGY1 (Residues: 1-187; Coverage: 100%)
Gene name: CTHT_0067970
Pfam: Ribosomal protein L22p/L17e
60S ribosomal protein l17-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein l17-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein l17-like protein in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein uL15/eL18 domain-containing protein
Chain: LQ
Length: 213 amino acids
Theoretical weight: 24.2 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S9B5 (Residues: 1-213; Coverage: 100%)
Gene name: CTHT_0045230
Pfam: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein uL15/eL18 domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Ribosomal protein L19
Chain: LR
Length: 2898 amino acids
Theoretical weight: 317.09 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S9T3 (Residues: 1-2898; Coverage: 100%)
Gene name: CTHT_0047080
Pfam:
Ribosomal protein L19 in PDB entry 8pvk, assembly 1, front view.
Ribosomal protein L19 in PDB entry 8pvk, assembly 1, side view.
Ribosomal protein L19 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L20
Chain: LS
Length: 174 amino acids
Theoretical weight: 20.34 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SCE2 (Residues: 1-174; Coverage: 100%)
Gene name: CTHT_0056900
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
60S ribosomal protein L20 in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L20 in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L20 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein l21-like protein
Chain: LT
Length: 160 amino acids
Theoretical weight: 18.16 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S0Z3 (Residues: 1-160; Coverage: 100%)
Gene name: CTHT_0011760
Pfam: Ribosomal protein L21e
60S ribosomal protein l21-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein l21-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein l21-like protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L22-like protein
Chain: LU
Length: 127 amino acids
Theoretical weight: 14.3 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SDS8 (Residues: 1-127; Coverage: 100%)
Gene name: CTHT_0052850
Pfam: Ribosomal L22e protein family
60S ribosomal protein L22-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L22-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L22-like protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein l23-like protein
Chain: LV
Length: 139 amino acids
Theoretical weight: 14.67 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SI44 (Residues: 1-139; Coverage: 100%)
Gene name: CTHT_0074440
Pfam: Ribosomal protein L14p/L23e
60S ribosomal protein l23-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein l23-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein l23-like protein in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein uL23 N-terminal domain-containing protein
Chain: LX
Length: 156 amino acids
Theoretical weight: 17.18 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S507 (Residues: 1-156; Coverage: 100%)
Gene name: CTHT_0023650
Pfam:
Large ribosomal subunit protein uL23 N-terminal domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein uL23 N-terminal domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein uL23 N-terminal domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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KOW domain-containing protein
Chain: LY
Length: 138 amino acids
Theoretical weight: 15.57 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0RYN9 (Residues: 1-138; Coverage: 100%)
Gene name: CTHT_0007360
Pfam:
KOW domain-containing protein in PDB entry 8pvk, assembly 1, front view.
KOW domain-containing protein in PDB entry 8pvk, assembly 1, side view.
KOW domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L27
Chain: LZ
Length: 135 amino acids
Theoretical weight: 15.8 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0RZE9 (Residues: 1-135; Coverage: 100%)
Gene name: CTHT_0002720
Pfam: Ribosomal L27e protein family
60S ribosomal protein L27 in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L27 in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L27 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L28-like protein
Chain: La
Length: 149 amino acids
Theoretical weight: 16.85 KDa
Source organism: Thermochaetoides thermophila DSM 1495
60S ribosomal protein L28-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L28-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L28-like protein in PDB entry 8pvk, assembly 1, top view.
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Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein
Chain: Lc
Length: 108 amino acids
Theoretical weight: 11.6 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SEI0 (Residues: 1-108; Coverage: 100%)
Gene name: CTHT_0063820
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein in PDB entry 8pvk, assembly 1, front view.
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein in PDB entry 8pvk, assembly 1, side view.
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein in PDB entry 8pvk, assembly 1, top view.
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Putative 60S ribosomal protein
Chain: Ld
Length: 120 amino acids
Theoretical weight: 13.87 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SD68 (Residues: 1-120; Coverage: 100%)
Gene name: CTHT_0059140
Pfam: Ribosomal protein L31e
Putative 60S ribosomal protein in PDB entry 8pvk, assembly 1, front view.
Putative 60S ribosomal protein in PDB entry 8pvk, assembly 1, side view.
Putative 60S ribosomal protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L32-like protein
Chain: Le
Length: 131 amino acids
Theoretical weight: 15.1 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S6V4 (Residues: 1-131; Coverage: 100%)
Gene name: CTHT_0027000
Pfam: Ribosomal protein L32
60S ribosomal protein L32-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L32-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L32-like protein in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein l33-like protein
Chain: Lf
Length: 109 amino acids
Theoretical weight: 12.33 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SCL3 (Residues: 1-109; Coverage: 100%)
Gene name: CTHT_0057640
Pfam: Ribosomal protein L35Ae
60S ribosomal protein l33-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein l33-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein l33-like protein in PDB entry 8pvk, assembly 1, top view.
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Ribosomal protein l34-like protein
Chain: Lg
Length: 119 amino acids
Theoretical weight: 13.49 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SFN0 (Residues: 1-119; Coverage: 100%)
Gene name: CTHT_0071430
Pfam: Ribosomal protein L34e
Ribosomal protein l34-like protein in PDB entry 8pvk, assembly 1, front view.
Ribosomal protein l34-like protein in PDB entry 8pvk, assembly 1, side view.
Ribosomal protein l34-like protein in PDB entry 8pvk, assembly 1, top view.
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dolichyl-diphosphooligosaccharide--protein glycotransferase
Chain: Lh
Length: 935 amino acids
Theoretical weight: 105.17 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S0D7 (Residues: 1-935; Coverage: 100%)
Gene name: CTHT_0009650
Pfam:
dolichyl-diphosphooligosaccharide--protein glycotransferase in PDB entry 8pvk, assembly 1, front view.
dolichyl-diphosphooligosaccharide--protein glycotransferase in PDB entry 8pvk, assembly 1, side view.
dolichyl-diphosphooligosaccharide--protein glycotransferase in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L36
Chain: Li
Length: 110 amino acids
Theoretical weight: 12.78 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0SBN1 (Residues: 1-110; Coverage: 100%)
Gene name: CTHT_0054170
Pfam: Ribosomal protein L36e
60S ribosomal protein L36 in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L36 in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L36 in PDB entry 8pvk, assembly 1, top view.
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Ribosomal protein L37
Chain: Lj
Length: 95 amino acids
Theoretical weight: 10.66 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S101 (Residues: 1-95; Coverage: 100%)
Gene name: CTHT_0011850
Pfam: Ribosomal protein L37e
Ribosomal protein L37 in PDB entry 8pvk, assembly 1, front view.
Ribosomal protein L37 in PDB entry 8pvk, assembly 1, side view.
Ribosomal protein L37 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L38-like protein
Chain: Lk
Length: 94 amino acids
Theoretical weight: 10.9 KDa
Source organism: Thermochaetoides thermophila DSM 1495
60S ribosomal protein L38-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L38-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L38-like protein in PDB entry 8pvk, assembly 1, top view.
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Large ribosomal subunit protein eL39
Chain: Ll
Length: 51 amino acids
Theoretical weight: 6.3 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: Q2H9R2 (Residues: 1-51; Coverage: 100%)
Gene name: CHGG_03042
Pfam: Ribosomal L39 protein
Large ribosomal subunit protein eL39 in PDB entry 8pvk, assembly 1, front view.
Large ribosomal subunit protein eL39 in PDB entry 8pvk, assembly 1, side view.
Large ribosomal subunit protein eL39 in PDB entry 8pvk, assembly 1, top view.
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60S ribosomal protein L43-like protein
Chain: Lp
Length: 92 amino acids
Theoretical weight: 10.16 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S6B0 (Residues: 1-92; Coverage: 100%)
Gene name: CTHT_0026110
Pfam: Ribosomal L37ae protein family
60S ribosomal protein L43-like protein in PDB entry 8pvk, assembly 1, front view.
60S ribosomal protein L43-like protein in PDB entry 8pvk, assembly 1, side view.
60S ribosomal protein L43-like protein in PDB entry 8pvk, assembly 1, top view.
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Ribosomal protein
Chain: Lr
Length: 217 amino acids
Theoretical weight: 24.06 KDa
Source organism: Thermochaetoides thermophila DSM 1495
UniProt:
  • Canonical: G0S4Z9 (Residues: 1-217; Coverage: 100%)
Gene name: CTHT_0023560
Pfam: Ribosomal protein L1p/L10e family
Ribosomal protein in PDB entry 8pvk, assembly 1, front view.
Ribosomal protein in PDB entry 8pvk, assembly 1, side view.
Ribosomal protein in PDB entry 8pvk, assembly 1, top view.
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RNA chain C1
Name: 26S rRNA
Representative chains: C1
Length: 3342 nucleotides
Theoretical weight: 1080.78 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
26S rRNA in PDB entry 8pvk, assembly 1, front view.
26S rRNA in PDB entry 8pvk, assembly 1, side view.
26S rRNA in PDB entry 8pvk, assembly 1, top view.
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RNA chain C2
Name: 5.8S ribosomal RNA
Representative chains: C2
Length: 156 nucleotides
Theoretical weight: 50.15 KDa
Rfam: 5.8S ribosomal RNA
5.8S ribosomal RNA in PDB entry 8pvk, assembly 1, front view.
5.8S ribosomal RNA in PDB entry 8pvk, assembly 1, side view.
5.8S ribosomal RNA in PDB entry 8pvk, assembly 1, top view.
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RNA chain C3
Name: ITS2
Representative chains: C3
Length: 162 nucleotides
Theoretical weight: 52.09 KDa
ITS2 in PDB entry 8pvk, assembly 1, front view.
ITS2 in PDB entry 8pvk, assembly 1, side view.
ITS2 in PDB entry 8pvk, assembly 1, top view.
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RNA chain C4
Name: 5S ribosomal RNA
Representative chains: C4
Length: 119 nucleotides
Theoretical weight: 38.31 KDa
Rfam: 5S ribosomal RNA
5S ribosomal RNA in PDB entry 8pvk, assembly 1, front view.
5S ribosomal RNA in PDB entry 8pvk, assembly 1, side view.
5S ribosomal RNA in PDB entry 8pvk, assembly 1, top view.
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