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SARS-CoV-2 Spike-derived peptide S976-984 S982A mutant (VLNDILARL) presented by HLA-A*02:01

X-ray diffraction
1.8Å resolution
PDB entry 8rbv coloured by chain, front view.
PDB entry 8rbv coloured by chain, side view.
PDB entry 8rbv coloured by chain, top view.
Source organisms:
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero trimer
Accessible surface area: 18383.84 Å2
Buried surface area: 5891.79 Å2
Dissociation area: 867.89 Å2
Dissociation energy (ΔGdiss): 10.56 kcal/mol
Dissociation entropy (TΔSdiss): 7.36 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-144169

Macromolecules

Ig-like domain-containing protein
Chain: A
Length: 365 amino acids
Theoretical weight: 40.97 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: Q53Z42 (Residues: 1-365; Coverage: 100%)
Gene name: HLA-A
Pfam:
Ig-like domain-containing protein in PDB entry 8rbv, assembly 1, front view.
Ig-like domain-containing protein in PDB entry 8rbv, assembly 1, side view.
Ig-like domain-containing protein in PDB entry 8rbv, assembly 1, top view.
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Beta-2-microglobulin
Chain: B
Length: 100 amino acids
Theoretical weight: 11.88 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Pfam: Immunoglobulin C1-set domain
Beta-2-microglobulin in PDB entry 8rbv, assembly 1, front view.
Beta-2-microglobulin in PDB entry 8rbv, assembly 1, side view.
Beta-2-microglobulin in PDB entry 8rbv, assembly 1, top view.
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Spike protein S2'
Chain: C
Length: 9 amino acids
Theoretical weight: 1.03 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Not provided
UniProt:
  • Canonical: P0DTC2 (Residues: 976-984; Coverage: 1%)
Gene names: 2, S
SARS-CoV-2 Spike-derived peptide S976-984 S982A mutant in PDB entry 8rbv, assembly 1, front view.
SARS-CoV-2 Spike-derived peptide S976-984 S982A mutant in PDB entry 8rbv, assembly 1, side view.
SARS-CoV-2 Spike-derived peptide S976-984 S982A mutant in PDB entry 8rbv, assembly 1, top view.
Molecule details ›

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