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Co-crystal structure of human DDB1 bound to fragment UB028668

X-ray diffraction
2Å resolution
PDB entry 9bbe coloured by chain, front view.
PDB entry 9bbe coloured by chain, side view.
PDB entry 9bbe coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: DNA damage-binding protein 1
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Multimeric state: monomeric
Accessible surface area: 45592.48 Å2
Buried surface area: 545.46 Å2
Dissociation area: 139.83 Å2
Dissociation energy (ΔGdiss): -0.87 kcal/mol
Dissociation entropy (TΔSdiss): 2.15 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-172469

Macromolecules

DNA damage-binding protein 1
Chain: A
Length: 1142 amino acids
Theoretical weight: 127.24 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q16531 (Residues: 1-1140; Coverage: 100%)
Gene names: DDB1, XAP1
Pfam:
DNA damage-binding protein 1 in PDB entry 9bbe, assembly 1, front view.
DNA damage-binding protein 1 in PDB entry 9bbe, assembly 1, side view.
DNA damage-binding protein 1 in PDB entry 9bbe, assembly 1, top view.
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