› 9bdp

Electron Microscopy
3.7Å resolution

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Released:
DOI: 10.2210/pdb9bdp/pdb
PDB entry 9bdp coloured by chain, front view.
PDB entry 9bdp coloured by chain, side view.
PDB entry 9bdp coloured by chain, top view.
Source organisms:
Primary publication:
Structural mechanism of angiogenin activation by the ribosome.
Loveland AB, Koh CS, Ganesan R, Jacobson A, Korostelev AA
Nature 630 769-776 (2024)
PMID: 38718836
Related structures: EMD-44464

Function and Biology Details

Reaction catalysed: 
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 86-mer (preferred)
PDBe Complex ID:
PDB-CPX-492699 (preferred)
Entry contents:
78 distinct polypeptide molecules
7 distinct RNA molecules
Macromolecules (85 distinct):
Large ribosomal subunit protein uL2 Chain: AL02
Molecule details ›
Chain: AL02
Length: 248 amino acids
Theoretical weight: 27 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TT27 (Residues: 2-249; Coverage: 97%)
Gene name: RPL8
Sequence domains:
Large ribosomal subunit protein uL3 Chain: AL03
Molecule details ›
Chain: AL03
Length: 394 amino acids
Theoretical weight: 45.12 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TL06 (Residues: 2-395; Coverage: 98%)
Gene name: RPL3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4 Chain: AL04
Molecule details ›
Chain: AL04
Length: 362 amino acids
Theoretical weight: 41.1 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: A0A5F9DCT1 (Residues: 16-377; Coverage: 90%)
Sequence domains:
Large ribosomal subunit protein uL18 Chain: AL05
Molecule details ›
Chain: AL05
Length: 293 amino acids
Theoretical weight: 34.08 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: P19949 (Residues: 3-295; Coverage: 99%)
Gene name: RPL5
Large ribosomal subunit protein eL6 Chain: AL06
Molecule details ›
Chain: AL06
Length: 251 amino acids
Theoretical weight: 28.82 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SKF7 (Residues: 41-291; Coverage: 86%)
Gene name: RPL6
Sequence domains:
Large ribosomal subunit protein uL30 Chain: AL07
Molecule details ›
Chain: AL07
Length: 225 amino acids
Theoretical weight: 26.66 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SV32 (Residues: 1-208; Coverage: 100%)
Gene name: RPL7
Sequence domains:
Large ribosomal subunit protein eL8 Chain: AL08
Molecule details ›
Chain: AL08
Length: 240 amino acids
Theoretical weight: 27.35 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1STW0 (Residues: 80-319; Coverage: 75%)
Gene name: RPL7A
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL6 Chain: AL09
Molecule details ›
Chain: AL09
Length: 190 amino acids
Theoretical weight: 21.63 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SWI6 (Residues: 1-190; Coverage: 99%)
Gene name: RPL9
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein uL16 Chain: AL10
Molecule details ›
Chain: AL10
Length: 213 amino acids
Theoretical weight: 24.51 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: B7NZQ2 (Residues: 2-214; Coverage: 100%)
Gene name: RPL10
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein uL5 Chain: AL11
Molecule details ›
Chain: AL11
Length: 170 amino acids
Theoretical weight: 19.4 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TUB8 (Residues: 8-177; Coverage: 96%)
Gene name: RPL11
Sequence domains:
Large ribosomal subunit protein uL11 Chain: AL12
Molecule details ›
Chain: AL12
Length: 153 amino acids
Theoretical weight: 16.56 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SMR7 (Residues: 9-161; Coverage: 93%)
Gene name: RPL12
Sequence domains:
Large ribosomal subunit protein eL13 Chain: AL13
Molecule details ›
Chain: AL13
Length: 210 amino acids
Theoretical weight: 24.2 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TKB3 (Residues: 2-211; Coverage: 100%)
Gene name: RPL13
Sequence domains: Ribosomal protein L13e
Large ribosomal subunit protein eL14 Chain: AL14
Molecule details ›
Chain: AL14
Length: 138 amino acids
Theoretical weight: 16.22 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SZ12 (Residues: 2-139; Coverage: 63%)
Gene name: RPL14
Sequence domains: Ribosomal protein L14
Large ribosomal subunit protein eL15 Chain: AL15
Molecule details ›
Chain: AL15
Length: 203 amino acids
Theoretical weight: 24.08 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1T0C1 (Residues: 2-204; Coverage: 100%)
Gene name: RPL15
Sequence domains: Ribosomal L15
Large ribosomal subunit protein uL13 Chain: AL16
Molecule details ›
Chain: AL16
Length: 199 amino acids
Theoretical weight: 23.14 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TVS8 (Residues: 5-203; Coverage: 98%)
Gene name: RPL13A
Large ribosomal subunit protein uL22 Chain: AL17
Molecule details ›
Chain: AL17
Length: 153 amino acids
Theoretical weight: 17.76 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SCJ6 (Residues: 2-154; Coverage: 83%)
Gene name: RPL17
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein eL18 Chain: AL18
Molecule details ›
Chain: AL18
Length: 187 amino acids
Theoretical weight: 21.57 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TFE0 (Residues: 2-188; Coverage: 100%)
Gene name: RPL18
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein eL19 Chain: AL19
Molecule details ›
Chain: AL19
Length: 180 amino acids
Theoretical weight: 21.61 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TYL6 (Residues: 2-181; Coverage: 92%)
Gene name: RPL19
Sequence domains: Ribosomal protein L19e
Large ribosomal subunit protein eL20 Chain: AL20
Molecule details ›
Chain: AL20
Length: 176 amino acids
Theoretical weight: 20.83 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TTY7 (Residues: 2-17, 20-175; Coverage: 98%)
Gene name: RPL18A
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Large ribosomal subunit protein eL21 Chain: AL21
Molecule details ›
Chain: AL21
Length: 159 amino acids
Theoretical weight: 18.48 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SHQ2 (Residues: 2-160; Coverage: 99%)
Gene name: RPL21
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein eL22 Chain: AL22
Molecule details ›
Chain: AL22
Length: 99 amino acids
Theoretical weight: 11.5 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TSG1 (Residues: 17-115; Coverage: 77%)
Gene name: RPL22
Sequence domains: Ribosomal L22e protein family
Large ribosomal subunit protein uL14 Chain: AL23
Molecule details ›
Chain: AL23
Length: 131 amino acids
Theoretical weight: 13.97 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1T6D1 (Residues: 10-140; Coverage: 94%)
Gene name: RPL23
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein eL24 Chain: AL24
Molecule details ›
Chain: AL24
Length: 121 amino acids
Theoretical weight: 14.13 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SE28 (Residues: 1-121; Coverage: 77%)
Gene name: RPL24
Sequence domains: Ribosomal protein L24e
Large ribosomal subunit protein uL23 Chain: AL25
Molecule details ›
Chain: AL25
Length: 118 amino acids
Theoretical weight: 13.73 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SE76 (Residues: 39-156; Coverage: 76%)
Gene name: RPL23A
Sequence domains:
Large ribosomal subunit protein uL24 Chain: AL26
Molecule details ›
Chain: AL26
Length: 134 amino acids
Theoretical weight: 15.89 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SQH0 (Residues: 1-134; Coverage: 92%)
Gene name: RPL26
Sequence domains:
Large ribosomal subunit protein eL27 Chain: AL27
Molecule details ›
Chain: AL27
Length: 135 amino acids
Theoretical weight: 15.7 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TXF6 (Residues: 2-136; Coverage: 99%)
Gene name: RPL27
Sequence domains:
Large ribosomal subunit protein uL15 Chain: AL28
Molecule details ›
Chain: AL28
Length: 147 amino acids
Theoretical weight: 16.49 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SNY0 (Residues: 2-148; Coverage: 99%)
Gene name: RPL27A
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL29 Chain: AL29
Molecule details ›
Chain: AL29
Length: 245 amino acids
Theoretical weight: 26.71 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SGR6 (Residues: 1-245; Coverage: 100%)
Gene name: RPL29
Sequence domains: Ribosomal L29e protein family
Large ribosomal subunit protein eL30 Chain: AL30
Molecule details ›
Chain: AL30
Length: 98 amino acids
Theoretical weight: 10.91 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TDL2 (Residues: 10-107; Coverage: 85%)
Gene name: RPL30
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein eL31 Chain: AL31
Molecule details ›
Chain: AL31
Length: 107 amino acids
Theoretical weight: 12.64 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SHG0 (Residues: 18-124; Coverage: 86%)
Gene name: RPL31
Sequence domains: Ribosomal protein L31e
Large ribosomal subunit protein eL32 Chain: AL32
Molecule details ›
Chain: AL32
Length: 128 amino acids
Theoretical weight: 15.02 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TUN8 (Residues: 2-129; Coverage: 95%)
Gene name: RPL32
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL33 Chain: AL33
Molecule details ›
Chain: AL33
Length: 109 amino acids
Theoretical weight: 12.45 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SF08 (Residues: 2-110; Coverage: 99%)
Gene name: RPL35A
Sequence domains: Ribosomal protein L35Ae
Large ribosomal subunit protein eL34 Chain: AL34
Molecule details ›
Chain: AL34
Length: 114 amino acids
Theoretical weight: 12.99 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TXG5 (Residues: 2-115; Coverage: 97%)
Gene name: RPL34
Sequence domains: Ribosomal protein L34e
Large ribosomal subunit protein uL29 Chain: AL35
Molecule details ›
Chain: AL35
Length: 122 amino acids
Theoretical weight: 14.44 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SIT5 (Residues: 2-123; Coverage: 99%)
Gene name: RPL35
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein eL36 Chain: AL36
Molecule details ›
Chain: AL36
Length: 102 amino acids
Theoretical weight: 11.89 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TTQ5 (Residues: 2-103; Coverage: 97%)
Gene name: RPL36
Sequence domains: Ribosomal protein L36e
Large ribosomal subunit protein eL37 Chain: AL37
Molecule details ›
Chain: AL37
Length: 86 amino acids
Theoretical weight: 10.09 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: U3KPD5 (Residues: 2-87; Coverage: 89%)
Gene name: RPL37
Sequence domains: Ribosomal protein L37e
Large ribosomal subunit protein eL38 Chain: AL38
Molecule details ›
Chain: AL38
Length: 69 amino acids
Theoretical weight: 8.11 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1U001 (Residues: 2-70; Coverage: 99%)
Gene name: RPL38
Sequence domains: Ribosomal L38e protein family
Large ribosomal subunit protein eL39 Chain: AL39
Molecule details ›
Chain: AL39
Length: 50 amino acids
Theoretical weight: 6.32 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TTN1 (Residues: 2-51; Coverage: 98%)
Sequence domains: Ribosomal L39 protein
Large ribosomal subunit protein eL40 Chain: AL40
Molecule details ›
Chain: AL40
Length: 52 amino acids
Theoretical weight: 6.2 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: P0DXC2 (Residues: 77-128; Coverage: 41%)
Gene name: UBA52
Small ribosomal subunit protein eS32 Chain: AL41
Molecule details ›
Chain: AL41
Length: 25 amino acids
Theoretical weight: 3.47 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: A0A087WNH4 (Residues: 1-25; Coverage: 100%)
Gene name: RPL41
Sequence domains: Ribosomal protein L41
Large ribosomal subunit protein eL42 Chain: AL42
Molecule details ›
Chain: AL42
Length: 104 amino acids
Theoretical weight: 12.2 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: A0A5F9D391 (Residues: 37-140; Coverage: 74%)
Sequence domains: Ribosomal protein L44
Large ribosomal subunit protein eL43 Chain: AL43
Molecule details ›
Chain: AL43
Length: 91 amino acids
Theoretical weight: 10.17 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SY53 (Residues: 2-92; Coverage: 99%)
Gene name: RPL37A
Sequence domains: Ribosomal L37ae protein family
Large ribosomal subunit protein eL28 Chain: ALNW
Molecule details ›
Chain: ALNW
Length: 124 amino acids
Theoretical weight: 14.22 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1U7L1 (Residues: 2-125; Coverage: 91%)
Gene name: RPL28
Sequence domains: Ribosomal L28e protein family
Large ribosomal subunit protein uL10 Chain: ALP0
Molecule details ›
Chain: ALP0
Length: 196 amino acids
Theoretical weight: 21.52 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SPK4 (Residues: 5-200; Coverage: 62%)
Gene name: RPLP0
Sequence domains:
Angiogenin Chain: ANG
Molecule details ›
Chain: ANG
Length: 147 amino acids
Theoretical weight: 16.58 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P03950 (Residues: 1-147; Coverage: 100%)
Gene names: ANG, RNASE5
Sequence domains: Pancreatic ribonuclease
Small ribosomal subunit protein RACK1 Chain: ARAC
Molecule details ›
Chain: ARAC
Length: 313 amino acids
Theoretical weight: 34.67 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SJB4 (Residues: 2-314; Coverage: 99%)
Gene name: RACK1
Sequence domains: WD domain, G-beta repeat
40S ribosomal protein SA Chain: AS00
Molecule details ›
Chain: AS00
Length: 217 amino acids
Theoretical weight: 24.36 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TJH8 (Residues: 2-218; Coverage: 77%)
Sequence domains: Ribosomal protein S2
Small ribosomal subunit protein eS1 Chain: AS01
Molecule details ›
Chain: AS01
Length: 213 amino acids
Theoretical weight: 24.76 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SS70 (Residues: 21-233; Coverage: 81%)
Gene name: RPS3A
Sequence domains: Ribosomal S3Ae family
Small ribosomal subunit protein uS5 Chain: AS02
Molecule details ›
Chain: AS02
Length: 221 amino acids
Theoretical weight: 24.44 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: O18789 (Residues: 58-278; Coverage: 75%)
Gene name: RPS2
Sequence domains:
Small ribosomal subunit protein uS3 Chain: AS03
Molecule details ›
Chain: AS03
Length: 228 amino acids
Theoretical weight: 25.22 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TNM3 (Residues: 1-228; Coverage: 94%)
Gene name: RPS3
Sequence domains:
40S ribosomal protein S4 Chain: AS04
Molecule details ›
Chain: AS04
Length: 262 amino acids
Theoretical weight: 29.52 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TA47 (Residues: 2-263; Coverage: 100%)
Sequence domains:
Small ribosomal subunit protein uS7 Chain: AS05
Molecule details ›
Chain: AS05
Length: 191 amino acids
Theoretical weight: 21.53 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TFM5 (Residues: 14-204; Coverage: 94%)
Gene name: RPS5
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS6 Chain: AS06
Molecule details ›
Chain: AS06
Length: 237 amino acids
Theoretical weight: 27.47 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TM55 (Residues: 1-237; Coverage: 95%)
Gene name: RPS6
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein eS7 Chain: AS07
Molecule details ›
Chain: AS07
Length: 189 amino acids
Theoretical weight: 21.63 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SVB0 (Residues: 6-194; Coverage: 97%)
Gene name: RPS7
Small ribosomal subunit protein eS8 Chain: AS08
Molecule details ›
Chain: AS08
Length: 206 amino acids
Theoretical weight: 24 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TJW1 (Residues: 2-207; Coverage: 99%)
Gene name: RPS8
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein uS4 Chain: AS09
Molecule details ›
Chain: AS09
Length: 185 amino acids
Theoretical weight: 21.65 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: B7NZS8 (Residues: 2-186; Coverage: 95%)
Gene name: RPS9
Sequence domains:
Small ribosomal subunit protein eS10 Chain: AS10
Molecule details ›
Chain: AS10
Length: 96 amino acids
Theoretical weight: 11.53 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TPV3 (Residues: 1-96; Coverage: 58%)
Sequence domains: Plectin/S10 domain
Small ribosomal subunit protein uS17 Chain: AS11
Molecule details ›
Chain: AS11
Length: 151 amino acids
Theoretical weight: 17.59 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TRM4 (Residues: 3-153; Coverage: 96%)
Gene name: RPS11
Sequence domains:
Small ribosomal subunit protein eS12 Chain: AS12
Molecule details ›
Chain: AS12
Length: 117 amino acids
Theoretical weight: 13.05 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SFR8 (Residues: 14-130; Coverage: 89%)
Gene name: RPS12
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Small ribosomal subunit protein uS15 Chain: AS13
Molecule details ›
Chain: AS13
Length: 149 amino acids
Theoretical weight: 17.06 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SP51 (Residues: 2-150; Coverage: 99%)
Gene name: RPS13
Sequence domains:
Small ribosomal subunit protein uS11 Chain: AS14
Molecule details ›
Chain: AS14
Length: 135 amino acids
Theoretical weight: 14.43 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1T1F0 (Residues: 16-150; Coverage: 89%)
Gene name: RPS14
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS19 Chain: AS15
Molecule details ›
Chain: AS15
Length: 120 amino acids
Theoretical weight: 14.25 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1U0Q2 (Residues: 12-131; Coverage: 83%)
Gene name: RPS15
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein uS9 Chain: AS16
Molecule details ›
Chain: AS16
Length: 142 amino acids
Theoretical weight: 16.03 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SGX4 (Residues: 5-146; Coverage: 97%)
Gene name: RPS16
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein eS17 Chain: AS17
Molecule details ›
Chain: AS17
Length: 132 amino acids
Theoretical weight: 15.25 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TU13 (Residues: 2-133; Coverage: 98%)
Gene name: RPS17
Sequence domains: Ribosomal S17
Small ribosomal subunit protein uS13 Chain: AS18
Molecule details ›
Chain: AS18
Length: 144 amino acids
Theoretical weight: 16.9 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TPG3 (Residues: 2-145; Coverage: 95%)
Gene name: RPS18
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS19 Chain: AS19
Molecule details ›
Chain: AS19
Length: 141 amino acids
Theoretical weight: 15.61 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TN62 (Residues: 3-143; Coverage: 97%)
Gene name: RPS19
Sequence domains: Ribosomal protein S19e
Small ribosomal subunit protein uS10 Chain: AS20
Molecule details ›
Chain: AS20
Length: 100 amino acids
Theoretical weight: 11.4 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SIZ2 (Residues: 18-117; Coverage: 84%)
Gene name: RPS20
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein eS21 Chain: AS21
Molecule details ›
Chain: AS21
Length: 83 amino acids
Theoretical weight: 9.12 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TM82 (Residues: 1-83; Coverage: 100%)
Gene name: RPS21
Sequence domains: Ribosomal protein S21e
Small ribosomal subunit protein uS8 Chain: AS22
Molecule details ›
Chain: AS22
Length: 129 amino acids
Theoretical weight: 14.73 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TG89 (Residues: 2-130; Coverage: 99%)
Gene name: RPS15A
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein uS12 Chain: AS23
Molecule details ›
Chain: AS23
Length: 141 amino acids
Theoretical weight: 15.63 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1SZ47 (Residues: 2-142; Coverage: 99%)
Gene name: RPS23
Sequence domains: Ribosomal protein S12/S23
40S ribosomal protein S24 Chain: AS24
Molecule details ›
Chain: AS24
Length: 124 amino acids
Theoretical weight: 14.43 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1T3D8 (Residues: 4-127; Coverage: 95%)
Gene name: RPS24
Sequence domains: Ribosomal protein S24e
40S ribosomal protein S25 Chain: AS25
Molecule details ›
Chain: AS25
Length: 254 amino acids
Theoretical weight: 29.51 KDa
Source organism: Oryctolagus cuniculus
Small ribosomal subunit protein eS26 Chain: AS26
Molecule details ›
Chain: AS26
Length: 101 amino acids
Theoretical weight: 11.65 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TFE8 (Residues: 2-102; Coverage: 88%)
Gene name: RPS26
Sequence domains: Ribosomal protein S26e
Small ribosomal subunit protein eS27 Chain: AS27
Molecule details ›
Chain: AS27
Length: 83 amino acids
Theoretical weight: 9.35 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TZ76 (Residues: 2-84; Coverage: 99%)
Gene name: RPS27
Sequence domains: Ribosomal protein S27
Small ribosomal subunit protein eS28 Chain: AS28
Molecule details ›
Chain: AS28
Length: 62 amino acids
Theoretical weight: 7.01 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1TIB4 (Residues: 7-68; Coverage: 90%)
Gene name: RPS28
Sequence domains: Ribosomal protein S28e
Small ribosomal subunit protein uS14 Chain: AS29
Molecule details ›
Chain: AS29
Length: 55 amino acids
Theoretical weight: 6.56 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1U7M4 (Residues: 2-56; Coverage: 98%)
Gene name: RPS29
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein eS30 Chain: AS30
Molecule details ›
Chain: AS30
Length: 55 amino acids
Theoretical weight: 6.32 KDa
Source organism: Oryctolagus cuniculus
UniProt:
  • Canonical: G1T8A2 (Residues: 79-133; Coverage: 41%)
Gene name: FAU
Sequence domains: Ribosomal protein S30
Elongation factor 1-alpha Chain: EF1A
Molecule details ›
Chain: EF1A
Length: 458 amino acids
Theoretical weight: 50.11 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02994 (Residues: 1-458; Coverage: 100%)
Gene names: P9513.7, TEF1, TEF2, YBR0913, YBR118W, YPR080W
Sequence domains:
18S Ribosomal RNA Chain: A18S
Molecule details ›
Chain: A18S
Length: 1869 nucleotides
Theoretical weight: 602.78 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
28S ribosomal RNA Chain: A28S
Molecule details ›
Chain: A28S
Length: 3601 nucleotides
Theoretical weight: 1166.97 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
5.8S ribosomal RNA Chain: A58S
Molecule details ›
Chain: A58S
Length: 156 nucleotides
Theoretical weight: 50.14 KDa
Sequence domains: 5.8S ribosomal RNA
5S ribosomal RNA Chain: A5S
Molecule details ›
Chain: A5S
Length: 120 nucleotides
Theoretical weight: 38.69 KDa
Sequence domains: 5S ribosomal RNA
tRNAfMet Chains: ETRN, PTRN
Molecule details ›
Chains: ETRN, PTRN
Length: 77 nucleotides
Theoretical weight: 24.8 KDa
Sequence domains: tRNA
Messenger RNA Chain: MRNA
Molecule details ›
Chain: MRNA
Length: 28 nucleotides
Theoretical weight: 8.59 KDa
tRNAAla Chain: TIRN
Molecule details ›
Chain: TIRN
Length: 76 nucleotides
Theoretical weight: 24.49 KDa
Sequence domains: tRNA

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.7Å
Relevant EMDB volumes: EMD-44464
Expression system: Escherichia coli

Quick links

Citations

1 review citation

The making and breaking of tRNAs by ribonucleases.
Elder et al. (2024)