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E. coli 70S-TEC complex in delivery state

Electron Microscopy
3.17Å resolution
PDB entry 9gr1 coloured by chain, front view.
PDB entry 9gr1 coloured by chain, side view.
PDB entry 9gr1 coloured by chain, top view.
Source organism: Escherichia coli BL21(DE3)
Assembly composition:
hetero 55-mer (preferred)
Entry contents: 48 distinct polypeptide molecules
7 distinct RNA molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: ribosomal protein and RNA
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Multimeric state: hetero 55-mer
PDBe Complex ID: PDB-CPX-495083

Macromolecules

Large ribosomal subunit protein bL33
Chain: 0
Length: 55 amino acids
Theoretical weight: 6.39 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5Z7 (Residues: 1-55; Coverage: 100%)
Gene names: ECBD_0090, rpmG
Pfam: Ribosomal protein L33
50S ribosomal protein L33 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L33 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L33 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL34
Chain: 1
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140NHV0 (Residues: 1-46; Coverage: 100%)
Gene names: ECBD_4330, rpmH
Pfam: Ribosomal protein L34
50S ribosomal protein L34 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L34 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L34 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL35
Chain: 2
Length: 65 amino acids
Theoretical weight: 7.31 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N9E3 (Residues: 1-65; Coverage: 100%)
Gene names: ECBD_1928, rpmI
Pfam: Ribosomal protein L35
50S ribosomal protein L35 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L35 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L35 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL36
Chain: 3
Length: 38 amino acids
Theoretical weight: 4.38 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5M6 (Residues: 1-38; Coverage: 100%)
Gene names: ECBD_0452, rpmJ
Pfam: Ribosomal protein L36
50S ribosomal protein L36 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L36 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L36 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS2
Chain: B
Length: 241 amino acids
Theoretical weight: 26.78 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140NFK2 (Residues: 1-241; Coverage: 100%)
Gene names: ECBD_3450, rpsB
Pfam: Ribosomal protein S2
Small ribosomal subunit protein uS2 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS2 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS2 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS3
Chain: C
Length: 233 amino acids
Theoretical weight: 26.03 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N4K1 (Residues: 1-233; Coverage: 100%)
Gene names: ECBD_0437, rpsC
Pfam:
Small ribosomal subunit protein uS3 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS3 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS3 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS4
Chain: D
Length: 206 amino acids
Theoretical weight: 23.51 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N548 (Residues: 1-206; Coverage: 100%)
Gene names: ECBD_0455, rpsD
Pfam:
Small ribosomal subunit protein uS4 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS4 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS4 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS5
Chain: E
Length: 167 amino acids
Theoretical weight: 17.63 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C3SR27 (Residues: 1-167; Coverage: 100%)
Gene names: A2J79_004072, A5U30_004537, ABE91_009095, ACN81_25445, ACU57_21035, AWP47_12720, B6R15_004084, B6R31_004983, BANRA_01934, BANRA_04313, BB545_28515, BCB93_004278, BG944_001118, BGM66_003608, BGZ_02605, BGZ_04110, BK300_26855, BK383_24720, BKL28_004558, BMT50_12290, BMT91_19995, BRV02_004612, BTB68_004371, BTQ06_10615, BXT93_05550, BvCmsKKP061_03015, BvCmsNSP007_03996, BvCmsSIP010_02670, C0P57_002653, C1Q91_004919, C2M16_25480, C2R31_004618, C3F40_19795, C6669_11440, C719_004902, C7B02_26525, C9160_24325, C9194_22620, C9Z68_22560, CCS08_00140, CF22_004864, CG704_20945, CIG67_10750, CQ842_14400, CQ842_22270, CR538_02495, CTR35_003615, CV83915_02795, CWS33_24865, D3C88_28455, D3G36_23125, D4N09_20180, D9D43_22625, D9E49_05165, D9J61_16660, DD762_23555, DIV22_15250, DL968_17160, DNQ45_03765, DNX30_25470, DS732_24270, DTL43_20990, DU321_12010, E2865_04456, E4K51_21500, E5H86_24515, E6D34_21750, EAI46_07485, ECs4168, EIA08_23965, EIZ93_12460, EN85_004364, EPS76_07205, EPS97_20085, EWK56_25005, ExPECSC038_03655, F7F11_22715, F7N46_24000, F9413_21225, F9461_25645, F9B07_24675, FGAF848_26000, FIJ20_21185, FJQ40_18315, FKO60_25645, FOI11_019250, FOI11_03930, FPI65_20315, FPS11_25420, FVB16_04880, FWK02_06280, FZU14_21830, G3V95_19855, G3W53_20965, G4A38_21520, G4A47_20790, G5603_24595, GAI89_24820, GAJ12_24710, GGB84_004466, GKF66_21555, GNW61_16640, GNZ05_25975, GOP25_22715, GP711_23315, GP944_18800, GP954_00935, GP965_04305, GP975_01195, GP979_01995, GQA06_03940, GQE86_20090, GQM04_10575, GQM13_25210, GQM21_11240, GQN24_22685, GQN34_23275, GRW05_09070, GRW24_04745, GTP92_23185, GUC01_21190, HEP30_018645, HEP34_004769, HHH44_004534, HI055_004141, HIE29_005188, HJQ60_005010, HKA49_005034, HLX92_10065, HLZ39_22205, HLZ50_22170, HMV95_19615, HV109_02180, HV209_14705, HVV39_09275, HVW04_17525, HVW43_18660, HVY77_02165, I6H00_20915, I6H02_12000, IFC14_004401, IH772_24005, J0541_004398, J5U05_004086, J8F57_004248, JNA68_24800, JNP96_25315, NCTC10082_02838, NCTC10089_00501, NCTC10418_00689, NCTC10429_01094, NCTC10764_03862, NCTC10767_01515, NCTC10865_00660, NCTC11126_02770, NCTC11181_02737, NCTC11341_01890, NCTC7922_04043, NCTC7927_00550, NCTC8179_05941, NCTC8333_00488, NCTC8621_00507, NCTC8622_00508, NCTC8959_03262, NCTC8960_03069, NCTC9001_04253, NCTC9045_00565, NCTC9075_00723, NCTC9077_00603, NCTC9702_00536, NCTC9706_02736, NCTC9962_06796, NOI85_25610, NY836_17895, OFN31_22790, OGM49_22340, P6223_003984, PWL68_004850, PWL68_005335, Q2V20_09695, Q2V64_25390, QDW62_02185, QO046_13765, R8G00_13250, R8O40_004922, RZR61_12900, SAMEA3472044_01161, SAMEA3472056_05412, SAMEA3752557_01953, V9Z47_02405, WR15_19615, rpsE
Pfam:
Small ribosomal subunit protein uS5 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein bS6
Chain: F
Length: 135 amino acids
Theoretical weight: 15.73 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P02358 (Residues: 1-135; Coverage: 100%)
Gene names: JW4158, b4200, rpsF
Pfam: Ribosomal protein S6
Small ribosomal subunit protein bS6, fully modified isoform in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein bS6, fully modified isoform in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein bS6, fully modified isoform in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS7
Chain: G
Length: 179 amino acids
Theoretical weight: 20.06 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C4ZUJ6 (Residues: 1-179; Coverage: 100%)
Gene names: BWG_3032, rpsG
Pfam: Ribosomal protein S7p/S5e
Small ribosomal subunit protein uS7 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS8
Chain: H
Length: 130 amino acids
Theoretical weight: 14.15 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N537 (Residues: 1-130; Coverage: 100%)
Gene names: ECBD_0445, rpsH
Pfam: Ribosomal protein S8
Small ribosomal subunit protein uS8 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS8 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS8 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS9
Chain: I
Length: 130 amino acids
Theoretical weight: 14.89 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N2Z9 (Residues: 1-130; Coverage: 100%)
Gene names: ECBD_0517, rpsI
Pfam: Ribosomal protein S9/S16
Small ribosomal subunit protein uS9 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS10
Chain: J
Length: 103 amino acids
Theoretical weight: 11.76 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N6Y5 (Residues: 1-103; Coverage: 100%)
Gene names: ECBD_0430, rpsJ
Pfam: Ribosomal protein S10p/S20e
Small ribosomal subunit protein uS10 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS10 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS10 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS11
Chain: K
Length: 129 amino acids
Theoretical weight: 13.87 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N7L9 (Residues: 1-129; Coverage: 100%)
Gene names: ECBD_0454, rpsK
Pfam: Ribosomal protein S11
Small ribosomal subunit protein uS11 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS11 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS11 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS12
Chain: L
Length: 124 amino acids
Theoretical weight: 13.81 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N4H3 (Residues: 1-124; Coverage: 100%)
Gene names: ECBD_0407, rpsL
Pfam: Ribosomal protein S12/S23
Small ribosomal subunit protein uS12 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS13
Chain: M
Length: 118 amino acids
Theoretical weight: 13.13 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5B4 (Residues: 1-118; Coverage: 100%)
Gene names: ECBD_0453, rpsM
Pfam: Ribosomal protein S13/S18
Small ribosomal subunit protein uS13 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS13 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS13 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS14
Chain: N
Length: 101 amino acids
Theoretical weight: 11.61 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N7K8 (Residues: 1-101; Coverage: 100%)
Gene names: ECBD_0444, rpsN
Pfam: Ribosomal protein S14p/S29e
Small ribosomal subunit protein uS14 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS14 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS14 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS15
Chain: O
Length: 89 amino acids
Theoretical weight: 10.29 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N811 (Residues: 1-89; Coverage: 100%)
Gene names: ECBD_0575, rpsO
Pfam: Ribosomal protein S15
Small ribosomal subunit protein uS15 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein bS16
Chain: P
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N7D8 (Residues: 1-82; Coverage: 100%)
Gene names: ECBD_1077, rpsP
Pfam: Ribosomal protein S16
30S ribosomal protein S16 in PDB entry 9gr1, assembly 1, front view.
30S ribosomal protein S16 in PDB entry 9gr1, assembly 1, side view.
30S ribosomal protein S16 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS17
Chain: Q
Length: 84 amino acids
Theoretical weight: 9.72 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N6Z6 (Residues: 1-84; Coverage: 100%)
Gene names: ECBD_0440, rpsQ
Pfam: Ribosomal protein S17
Small ribosomal subunit protein uS17 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein uS17 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein uS17 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein bS18
Chain: R
Length: 75 amino acids
Theoretical weight: 9.01 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0AAD1DH49 (Residues: 1-75; Coverage: 100%)
Gene names: EGY08_12410, rpsR
Small ribosomal subunit protein bS18 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein bS18 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein bS18 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein uS19
Chain: S
Length: 92 amino acids
Theoretical weight: 10.46 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N528 (Residues: 1-92; Coverage: 100%)
Gene names: ECBD_0435, rpsS
Pfam: Ribosomal protein S19
30S ribosomal protein S19 in PDB entry 9gr1, assembly 1, front view.
30S ribosomal protein S19 in PDB entry 9gr1, assembly 1, side view.
30S ribosomal protein S19 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein bS20
Chain: T
Length: 87 amino acids
Theoretical weight: 9.71 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140NFU3 (Residues: 1-87; Coverage: 100%)
Gene names: ECBD_3593, rpsT
Pfam: Ribosomal protein S20
Small ribosomal subunit protein bS20 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein bS20 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein bS20 in PDB entry 9gr1, assembly 1, top view.
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Small ribosomal subunit protein bS21
Chain: U
Length: 71 amino acids
Theoretical weight: 8.52 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A6I7DAD8 (Residues: 1-71; Coverage: 100%)
Gene names: F1325_15275, rpsU
Pfam: Ribosomal protein S21
Small ribosomal subunit protein bS21 in PDB entry 9gr1, assembly 1, front view.
Small ribosomal subunit protein bS21 in PDB entry 9gr1, assembly 1, side view.
Small ribosomal subunit protein bS21 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL2
Chain: c
Length: 273 amino acids
Theoretical weight: 29.92 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N7J1 (Residues: 1-273; Coverage: 100%)
Gene names: ECBD_0434, rplB
Pfam:
50S ribosomal protein L2 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L2 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L2 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL3
Chain: d
Length: 209 amino acids
Theoretical weight: 22.29 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N3G7 (Residues: 1-209; Coverage: 100%)
Gene names: ECBD_0431, rplC
Pfam: Ribosomal protein L3
Large ribosomal subunit protein uL3 in PDB entry 9gr1, assembly 1, front view.
Large ribosomal subunit protein uL3 in PDB entry 9gr1, assembly 1, side view.
Large ribosomal subunit protein uL3 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL4
Chain: e
Length: 201 amino acids
Theoretical weight: 22.12 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5K8 (Residues: 1-201; Coverage: 100%)
Gene names: ECBD_0432, rplD
Pfam: Ribosomal protein L4/L1 family
50S ribosomal protein L4 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L4 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L4 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL5
Chain: f
Length: 179 amino acids
Theoretical weight: 20.33 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5A3 (Residues: 1-179; Coverage: 100%)
Gene names: ECBD_0443, rplE
Pfam:
50S ribosomal protein L5 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L5 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L5 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL6
Chain: g
Length: 177 amino acids
Theoretical weight: 18.93 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N2T1 (Residues: 1-177; Coverage: 100%)
Gene names: ECBD_0446, rplF
Pfam: Ribosomal protein L6
50S ribosomal protein L6 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L6 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L6 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL9
Chain: h
Length: 149 amino acids
Theoretical weight: 15.79 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140NDV1 (Residues: 1-149; Coverage: 100%)
Gene names: ECBD_3831, rplI
Pfam:
50S ribosomal protein L9 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L9 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L9 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL13
Chain: i
Length: 142 amino acids
Theoretical weight: 16.05 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N598 (Residues: 1-142; Coverage: 100%)
Gene names: ECBD_0516, rplM
Pfam: Ribosomal protein L13
50S ribosomal protein L13 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L13 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L13 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL14
Chain: j
Length: 123 amino acids
Theoretical weight: 13.57 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N3H4 (Residues: 1-123; Coverage: 100%)
Gene names: ECBD_0441, rplN
Pfam: Ribosomal protein L14p/L23e
50S ribosomal protein L14 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L14 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L14 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL15
Chain: k
Length: 144 amino acids
Theoretical weight: 15.01 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N711 (Residues: 1-144; Coverage: 100%)
Gene names: ECBD_0450, rplO
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
50S ribosomal protein L15 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L15 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L15 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL16
Chain: l
Length: 136 amino acids
Theoretical weight: 15.33 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N6Z2 (Residues: 1-136; Coverage: 100%)
Gene names: ECBD_0438, rplP
Pfam: Ribosomal protein L16p/L10e
50S ribosomal protein L16 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L16 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L16 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL17
Chain: m
Length: 127 amino acids
Theoretical weight: 14.39 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N4M0 (Residues: 1-127; Coverage: 100%)
Gene names: ECBD_0457, rplQ
Pfam: Ribosomal protein L17
50S ribosomal protein L17 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L17 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L17 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL18
Chain: n
Length: 117 amino acids
Theoretical weight: 12.79 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N4L0 (Residues: 1-117; Coverage: 100%)
Gene names: ECBD_0447, rplR
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
50S ribosomal protein L18 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L18 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L18 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL19
Chain: o
Length: 115 amino acids
Theoretical weight: 13.16 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N6T7 (Residues: 1-115; Coverage: 100%)
Gene names: ECBD_1080, rplS
Pfam: Ribosomal protein L19
50S ribosomal protein L19 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L19 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L19 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL20
Chain: p
Length: 118 amino acids
Theoretical weight: 13.53 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140NBS1 (Residues: 1-118; Coverage: 100%)
Gene names: ECBD_1929, rplT
Pfam: Ribosomal protein L20
50S ribosomal protein L20 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L20 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L20 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL21
Chain: q
Length: 103 amino acids
Theoretical weight: 11.59 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5D7 (Residues: 1-103; Coverage: 100%)
Gene names: ECBD_0556, rplU
Pfam: Ribosomal prokaryotic L21 protein
50S ribosomal protein L21 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L21 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L21 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL22
Chain: r
Length: 110 amino acids
Theoretical weight: 12.25 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N2S3 (Residues: 1-110; Coverage: 100%)
Gene names: ECBD_0436, rplV
Pfam: Ribosomal protein L22p/L17e
50S ribosomal protein L22 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L22 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L22 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL23
Chain: s
Length: 100 amino acids
Theoretical weight: 11.22 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C6EGE8 (Residues: 1-100; Coverage: 100%)
Gene names: ECBD_0433, rplW
Pfam: Ribosomal protein L23
50S ribosomal protein L23 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L23 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L23 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL24
Chain: t
Length: 104 amino acids
Theoretical weight: 11.34 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N5L7 (Residues: 1-104; Coverage: 100%)
Gene names: ECBD_0442, rplX
Pfam:
50S ribosomal protein L24 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L24 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L24 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL25
Chain: u
Length: 94 amino acids
Theoretical weight: 10.71 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N846 (Residues: 1-94; Coverage: 100%)
Gene names: ECBD_1472, rplY
Pfam: Ribosomal L25p family
50S ribosomal protein L25 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L25 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L25 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL27
Chain: v
Length: 85 amino acids
Theoretical weight: 9.15 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N340 (Residues: 1-85; Coverage: 100%)
Gene names: ECBD_0557, rpmA
Pfam: Ribosomal L27 protein
50S ribosomal protein L27 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L27 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L27 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL28
Chain: w
Length: 78 amino acids
Theoretical weight: 9.03 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N3L9 (Residues: 1-78; Coverage: 100%)
Gene names: ECBD_0089, rpmB
Pfam: Ribosomal L28 family
50S ribosomal protein L28 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L28 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L28 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL29
Chain: x
Length: 63 amino acids
Theoretical weight: 7.29 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N7F5 (Residues: 1-63; Coverage: 100%)
Gene names: ECBD_0439, rpmC
Pfam: Ribosomal L29 protein
50S ribosomal protein L29 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L29 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L29 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein uL30
Chain: y
Length: 59 amino acids
Theoretical weight: 6.55 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140N7G4 (Residues: 1-59; Coverage: 100%)
Gene names: ECBD_0449, rpmD
Pfam: Ribosomal protein L30p/L7e
50S ribosomal protein L30 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L30 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L30 in PDB entry 9gr1, assembly 1, top view.
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Large ribosomal subunit protein bL32
Chain: z
Length: 57 amino acids
Theoretical weight: 6.46 KDa
Source organism: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A140NAZ2 (Residues: 1-57; Coverage: 100%)
Gene names: ECBD_2512, rpmF
Pfam: Ribosomal L32p protein family
50S ribosomal protein L32 in PDB entry 9gr1, assembly 1, front view.
50S ribosomal protein L32 in PDB entry 9gr1, assembly 1, side view.
50S ribosomal protein L32 in PDB entry 9gr1, assembly 1, top view.
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RNA chain A
Name: 16S ribosomal RNA
Representative chains: A
Length: 1542 nucleotides
Theoretical weight: 499.86 KDa
16S ribosomal RNA in PDB entry 9gr1, assembly 1, front view.
16S ribosomal RNA in PDB entry 9gr1, assembly 1, side view.
16S ribosomal RNA in PDB entry 9gr1, assembly 1, top view.
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RNA chain X
Name: mRNA in ribosome channel
Representative chains: X
Length: 16 nucleotides
Theoretical weight: 5 KDa
mRNA in ribosome channel in PDB entry 9gr1, assembly 1, front view.
mRNA in ribosome channel in PDB entry 9gr1, assembly 1, side view.
mRNA in ribosome channel in PDB entry 9gr1, assembly 1, top view.
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RNA chain Z
Name: Phe-NH-tRNA(Phe) A-site
Representative chains: Z
Length: 76 nucleotides
Theoretical weight: 24.75 KDa
Phe-NH-tRNA(Phe) A-site in PDB entry 9gr1, assembly 1, front view.
Phe-NH-tRNA(Phe) A-site in PDB entry 9gr1, assembly 1, side view.
Phe-NH-tRNA(Phe) A-site in PDB entry 9gr1, assembly 1, top view.
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RNA chain a
Name: 23S ribosomal RNA
Representative chains: a
Length: 2925 nucleotides
Theoretical weight: 948.63 KDa
23S ribosomal RNA in PDB entry 9gr1, assembly 1, front view.
23S ribosomal RNA in PDB entry 9gr1, assembly 1, side view.
23S ribosomal RNA in PDB entry 9gr1, assembly 1, top view.
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RNA chain b
Name: 5S ribosomal RNA
Representative chains: b
Length: 119 nucleotides
Theoretical weight: 38.48 KDa
5S ribosomal RNA in PDB entry 9gr1, assembly 1, front view.
5S ribosomal RNA in PDB entry 9gr1, assembly 1, side view.
5S ribosomal RNA in PDB entry 9gr1, assembly 1, top view.
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RNA chain 4
Name: mRNA in SD-aSD duplex
Representative chains: 4
Length: 10 nucleotides
Theoretical weight: 3.3 KDa
mRNA in SD-aSD duplex in PDB entry 9gr1, assembly 1, front view.
mRNA in SD-aSD duplex in PDB entry 9gr1, assembly 1, side view.
mRNA in SD-aSD duplex in PDB entry 9gr1, assembly 1, top view.
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RNA chain Y
Name: tRNA(fmet) P-site
Representative chains: Y
Length: 77 nucleotides
Theoretical weight: 24.83 KDa
tRNA(fmet) P-site in PDB entry 9gr1, assembly 1, front view.
tRNA(fmet) P-site in PDB entry 9gr1, assembly 1, side view.
tRNA(fmet) P-site in PDB entry 9gr1, assembly 1, top view.
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