![]() |
CAPRI: Critical Assessment of PRediction of InteractionsCommunity wide experiment on the comparative evaluation of protein-protein docking for structure predictionHosted By EMBL/EBI-PDBe GroupResult (Target 122)For T122, the sequence ID threshold was lowered to 30%, since a significant fraction of participants only modeled part of the system. Since this was the interaction part, it made sense to modify the scoring criteria and not disqualify those submissions. Results are good, with 2 medium-quality and 7 acceptable submissions in top-1, these numbers increasing to 4 and 24 for top-5. Predictor top Scorer top 1 3 5 10 100 1 3 5 10 high 0 0 0 0 0 0 0 0 0 medium 2 4 4 7 7 0 1 1 5 acceptable 7 16 24 39 107 4 9 15 20 incorrect 24 76 133 274 1967 16 49 82 173 clashes/lowid 2 5 6 11 300 0 1 2 2 total 35 103 171 339 2389 20 60 100 200Link to result details: Result details Result (Target 123)T123 was the binding of PorM N-terminal domain with a nanobody. the PorM was not provided as unbound, but there are hundreds of hits for nanobodies, including the appropriate one (released by the PDB at the beginning of the prediction round). This was a difficult target; the whole set of submissions contained *one* acceptable model. Summary for T123: Predictor top Scorer top 1 3 5 10 100 1 3 5 10 high 0 0 0 0 0 0 0 0 0 medium 0 0 0 0 0 0 0 0 0 acceptable 0 0 0 0 1 0 0 0 0 incorrect 29 85 145 290 1902 15 49 82 174 clashes/lowid 2 8 9 19 484 4 8 13 16 total 32 96 160 320 2403 19 57 95 190Link to result details: Result details Result (Target 124)T124 was the binding of the PorM C-terminal domain, as dimer, to a nanobody. the PorM dimer was not provided (released by PDB 6 months after the prediction round) and basically had no templates. the structure of the nanobody was released by the PDB at the start of the prediction round. Assessment T124.1 is the dimeric PorM interface, of 2000 A2. No acceptable submissions. Summary for T124.1: Predictor top Scorer top 1 3 5 10 100 1 3 5 10 high 0 0 0 0 0 0 0 0 0 medium 0 0 0 0 0 0 0 0 0 acceptable 0 0 0 0 0 0 0 0 0 incorrect 29 87 145 290 1966 9 27 45 86 clashes/lowid 0 0 0 0 90 0 0 0 0 total 29 87 145 290 2056 9 27 45 86 Summary for T124.2: Predictor top Scorer top 1 3 5 10 100 1 3 5 10 high 0 0 0 0 0 0 0 0 0 medium 0 0 0 0 0 0 0 0 0 acceptable 0 0 0 0 0 0 0 0 0 incorrect 26 82 137 279 1802 17 48 84 171 clashes/lowid 2 2 4 5 112 1 2 2 3 total 29 87 145 290 2056 18 54 90 180 Link to result details: ID mappingsLink ID for predictors: PredictorsLink ID for scorers: Scorers Announcement
This Round offers a total of 3 targets: T122, T123, T124. Documentation and Targets Round 39
SCORERS
Scorers can download the server set of submissions from Email Problems or Queries to Sameer Velankar ![]() |