The Electron Microscopy Data Bank (EMDB) is a public repository for cryogenic-sample Electron Microscopy (cryoEM) volumes and representative tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, helical reconstruction, electron tomography, subtomogram averaging, and electron crystallography. More...
As of 05 February 2025, EMDB contains 42437 entries (latest entries, trends).
EMDB News
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06 January 2024: We are delighted to share that EMDB has officially been elevated to a Core Data Resource by ELIXIR, recognising it as a European data resource of fundamental importance to the wider life-science community and the long-term preservation of biological data.
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22 November 2023: We are happy to share the most recent version of the EMDB Nucleic Acids Research paper. The paper describes recent developments and future plans of the EMDB in the context of the worldwide Protein Data Bank. Check it out now! https://doi.org/10.1093/nar/gkad1019
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(Show all)Active SV40 LTAg complex with DNA (3D variability component_002, frame_005).
Chromosome Passenger Complex (CPC) localization module in complex with H3.T3p-nucleosome - raw concensus map
SV40 large T antigen assembly with DNA in presence of ATP (3D variability component_001, frame_000).
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI, Original map G protein
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 9 at day 14
Cryo-EM structure of cowpox virus M2 in complex with human B7.1 (heptameric ring)
Cryo-EM structure of a type II ZorAB complex from Sulfuricurvum kujiense
Human TOP3B-TDRD3 core complex in post-cleavage state with ssDNA 5'-ACAGATATT-3
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 3
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map receptor
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 3 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 3
Human TOP3B-TDRD3 core complex in DNA rejoining state with ssDNA 5'-GACAGATATT-3
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 5
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 2 at day 0
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 4
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 1 at day 14
Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the Apo State Determined on Krios microscope
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map G protein
Human TOP3B-TDRD3 core complex in pre-cleavage state with ssDNA 5'-ACAGATATT-3
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 5 at day 14
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 7 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 6 at day 14
Cryo-EM structure of cowpox virus M2 in complex with human B7.1 (hexameric ring)
Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (hexameric ring)
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 4 at day 14
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map G protein
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 2 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 7 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 9 at day 0
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 1
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 1 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 4
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 10 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 8 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 2 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 4 at day 0
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, PG-binding domain focused map
Cryo-EM structure of E. coli FimH lectin domain bound to Fabs 440-2 and 454-3
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, composite map
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 5 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 1 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 6
Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the Apo State Determined on Talos Arctica microscope
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 3 at day 14
Structure of the Shigella flexneri bacteriophage Sf14 - tail helical
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 7 at day 14
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map receptor
Cryo-EM structure of the C. neoformans lipid flippase Apt1-Cdc50 in the E1 state
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 10 at day 0
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 6
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 7 at day 14
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 9 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 5 at day 14
Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the UDP-bound State Determined on Talos Arctica microscope
Cryo-EM focused map masking butyrolactol A binding site of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 6 at day 0
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 7
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 3 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 10 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 1
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 6 at day 0
Cryo-EM structure of the TREX-2 complex in complex with the N-terminal motif of Sub2
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 6 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 7
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 8 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 9 at day 14
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 2
Structure of mutant 30S subunit with extended helix 26, version 3
Cryo-EM structure of Sudan ebolavirus glycoprotein complexed with hNPC1-C
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, consensus map
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 5 at day 0
Polyclonal immune complex of Fab binding the H1 HA from serum of donor 1 at day 14
Cryo-EM consensus map of the C. neoformans lipid flippase Apt1-Cdc50 bound with butyrolactol A in the E2P state
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 10 at day 0
Polyclonal immune complex of Fab binding the H3 HA from serum of patient 2
Polyclonal immune complex of Fab binding the H1 HA from serum of patient 5
Dimerized human TOP3B-TDRD3 core complex with a DNA mismatch bubble
Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (septameric ring)
Polyclonal immune complex of Fab binding the H3 HA from serum of donor 2 at day 0
The conformation of E1 with PSBD in E2 components of pyruvate dehydrogenase complex
The another conformation of E1 with PSBD and LD in E2 components of pyruvate dehydrogenase complex
Versatile Aromatic Prenyltransferase auraA in complex with DMSPP and cyclo-(L-Val-DH-His)
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
The structure of the core of the pyruvate dehydrogenase complex in the mitochondria of pig hearts.
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Structure of native di-heteromeric GluN1-GluN2A NMDA receptor in rat cortex and hippocampus
The map of pyruvate dehydrogenase E1 bound to the peripheral subunit binding domain and lipoyl domain of E2
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
The conformation of lipoy domain binding the core of the pyruvate dehydrogenase complex.
Endogenous dihydrolipoamide acetyltransferase (E2) core of pyruvate dehydrogenase complex from pig heart
The conformation of E3 with PSBD in E2 components of pyruvate dehydrogenase complex
Structure of native tri-heteromeric GluN1-GluN2A-GluN2B NMDA receptor in rat cortex and hippocampus
The map of pyruvate dehydrogenase E1 bound to the peripheral subunit binding domain of E2
Versatile Aromatic Prenyltransferase auraA for Imidazole-Containing Diketopiperazines
Structure of the native 2-oxoglutarate dehydrogenase complex (OGDHC) in the adult cortex and hippocampus
Structure of native di-heteromeric GluN1-GluN2B NMDA receptor in rat cortex and hippocampus
Versatile Aromatic Prenyltransferase auraA in complex with DMAPP and cyclo-(L-Val-L-His)
Structure of the native glutamine synthetase in the adult cortex and hippocampus
Versatile Aromatic Prenyltransferase auraA mutant-Y207A in complex with DMSPP
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of intact S2)
Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of S2-bottom)
Cryo-EM structure of SARS-CoV-2 D614G S with two ACE2 receptors binding (RB2) in prefusion conformation
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of S-bottom)
Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation (focused refinement of NTD-SD1-RBD-ACE2)
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC)
Cryo-EM structure of SARS-CoV-2 D614G S with one ACE2 receptor binding (RB1) in prefusion conformation
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of S2-top)
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of NTD-SD1-RBD-ACE2)
SV40 large T antigen assembly with DNA in presence of ATP (3D variability component_000, frame_000).
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (focused refinement, class 3A)
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (focused refinement, class 3Ca)
Partial (52mer) encapsulin shell assembly from Mycobacterium tuberculosis
Active SV40 LTAg complex with DNA (3D variability component_001, frame_015).
SV40 LTAg complex with ADP and DNA (3D variability component_002, frame_019).
Active SV40 LTAg complex with DNA (3D variability component_002, frame_010).
Active SV40 LTAg complex with DNA (3D variability component_001, frame_019).
Active SV40 LTAg complex with DNA (3D variability component_002, frame_015).
Cryo-EM structure of coproheme decarboxylase from Corynebacterium diphtheriae in complex with heme b
NDH-PSI-LHCI supercomplex from S. oleracea: local refined membrane arm of NDH
SV40 LTAg complex with ADP and DNA (3D variability component_001, frame_000).
Cryo-EM structure of Apo coproheme decarboxylase from Corynebacterium diphtheria.
Active SV40 LTAg complex with DNA (3D variability component_001, frame_010).
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (focused refinement, class 3Cb)
CryoEM structure of rice nucleosome containing a H4 variant chimera
Chromosome Passenger Complex (CPC) localization module in complex with H3.T3p-nucleosome - focused refinement of the distal end of CPC
Microtubule plus end architecture in presence of the ciliary tip module.
SV40 large T antigen assembly with DNA in presence of ATP (3D variability component_000, frame_019).
Structure of the AAP filament of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #1
Active SV40 LTAg complex with DNA (3D variability component_000, frame_019).
Structure of the archaellum of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Active SV40 LTAg complex with DNA (3D variability component_001, frame_005).
SV40 large T antigen assembly with DNA in presence of ATP (3D variability component_001, frame_019).
SV40 LTAg complex with ADP and DNA (3D variability component_000, frame_019).
Active SV40 LTAg complex with DNA (3D variability component_000, frame_000).
Partial (54mer) encapsulin shell assembly from Mycobacterium tuberculosis
NDH-PSI-LHCI supercomplex from S. oleracea: local refined PSI-LHCI-2
Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2
Active SV40 LTAg complex with DNA (3D variability component_002, frame_000).
SV40 LTAg complex with ADP and DNA (3D variability component_001, frame_019).
SV40 large T antigen assembly with DNA in presence of ATP (3D variability component_002, frame_019).
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR (4.3) complex
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) from Clostridium autoethanogenum (composite structure, semi-extended state)
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (focused refinement, class 3B)
Single-particle cryo-EM of the P1-P40P90 heterodimer from Mycoplasma pneumoniae below 10 Angstrom resolution.
Active SV40 LTAg complex with DNA (3D variability component_002, frame_019).
NDH-PSI-LHCI supercomplex from S. oleracea: local refined border region between NDH and PSI-LHCI-2
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (composite structure, class 3B)
SV40 large T antigen assembly with DNA in presence of ATP (3D variability component_002, frame_000).
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) from Clostridium autoethanogenum (composite structure, closed and CO-bound state)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_005).
Active SV40 LTAg complex with DNA (3D variability component_001, frame_000).
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) from Clostridium autoethanogenum (focused refinement, semi-extended state)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_015).
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR (3.2) complex
SV40 LTAg complex with ADP and DNA (3D variability component_002, frame_000).
Broad substrate scope C-C oxidation in cyclodipeptides catalysed by a flavin-dependent filament
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #2
Chromosome Passenger Complex (CPC) localization module in complex with H3.T3p-nucleosome
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) from Clostridium autoethanogenum (consensus map)
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (composite structure, class 3A)
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with corrinoid iron-sulfur protein (CoFeSP) from Clostridium autoethanogenum (composite structure, class 3Cb)
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) in complex with ferredoxin (Clostridium autoethanogenum)
96nm axonemal repeat of Chlamydomonas r. mutant IFT46-mNG VASHko lacking tubulin detyrosination
Partial (48mer) encapsulin shell assembly from Mycobacterium tuberculosis
Structure of carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) from Clostridium autoethanogenum (focused refinement, closed and CO-bound state)
SV40 LTAg complex with ADP and DNA (3D variability component_000, frame_000).
Active SV40 LTAg complex with DNA (3D variability component_000, frame_010).