The Electron Microscopy Data Bank (EMDB) is a public repository for cryogenic-sample Electron Microscopy (cryoEM) volumes and representative tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, helical reconstruction, electron tomography, subtomogram averaging, and electron crystallography. More...
As of 29 January 2025, EMDB contains 42167 entries (latest entries, trends).
EMDB News
-
06 January 2024: We are delighted to share that EMDB has officially been elevated to a Core Data Resource by ELIXIR, recognising it as a European data resource of fundamental importance to the wider life-science community and the long-term preservation of biological data.
-
22 November 2023: We are happy to share the most recent version of the EMDB Nucleic Acids Research paper. The paper describes recent developments and future plans of the EMDB in the context of the worldwide Protein Data Bank. Check it out now! https://doi.org/10.1093/nar/gkad1019
Explore EMDB
Select a graph from the pull-down menu. Click on any element of a graph to see the corresponding list of EMDB entries.
Quick links
Recent Entries
(Show all)Kinetochore on isolated human mitotic chromosome after degradation of CENP-C
Cryo-EM structure of Bride of Sevenless extracellular domain (dimer, Sevenless-bound form)
HIV-1 B41 SOSIP.v4.1 Env in Complex with N241 Epitope and Anti-Immune Complex Antibodies
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 3G6
The Anti-Mullerian Hormone prodomain in complex with the growth factor and 6E11 Fab in C1 symmetry
Structure of the IFN-lambda3/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta
Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 in complex with human antibody 2D22 Fab at 37 deg C
Cryo-EM structure of the overlapping di-nucleosome (intermediate form1)
Cryo-EM structure of the overlapping di-nucleosome (intermediate form2)
PrRP31 bound prolactin-releasing peptide receptor coupled with Gi protein complex
Cryo-EM structure of the Drosophila INDY (DIDS-bound outward-open, pH 6)
Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
PrRP31 bound prolactin-releasing peptide receptor coupled with Gq protein complex
Cryo-EM structure of the Drosophila INDY (DIDS-bound asymmetric, pH 6)
Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 at 4 deg C
Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant at 4 deg C
Cryo-EM structure of the Drosophila INDY (citrate-bound inward-occluded, pH 6)
The cryo-EM structure of spermine induced a-synuclein fibril in Tris buffer.
Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 in complex with human antibody C10 Fab at 37 deg C
Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant in complex with human antibody 2D22 Fab at 37 deg C
Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant in complex with human antibody C10 Fab at 37 deg C
Cryo-EM structure of Escherichia coli DppBCDF in the resting state
Cryo-EM reveals cholesterol binding in the lysosomal GPCR-like protein LYCHOS
Cryo-EM structure of Escherichia coli DppBCDF complex bound to ATPgammaS
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) with C2 symmetry
Cryo-EM structure of Escherichia coli DppABCDF in the pre-catalytic state
Structure of EG.5.1 S trimer with 2 down-RBDs complex with antibody CYFN1006-2.
Cryo-EM structure of Escherichia coli DppBCDF complex bound to AMPPNP
Structure of XBB.1.16 S trimer with 3 down-RBDs complex with antibody CYFN1006-1.
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) with C1 symmetry
Poliovirus type 1 (strain Mahoney) stabilised virus-like particle (PV1 SC6b) in complex with GPP3 and GSH.
Cryo-EM structure of the light-driven sodium-pumping rhodopsin KR2
Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR2 complex (4.3) bound to AMPNPP
CENP-A/H4 tetra-tetrasome assembled on 342 bp alpha-satellite DNA.
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
CryoEM structure of Enterococcus italicus Csm-crRNA complex bound to pNppA3 and AMPNPP
H3/H4 di-tetrasome assembled on alpha-satellite DNA (closed conformation).
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR2 complex bound to pNppA3 and AMPNPP
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a mammalian expression system
Hepatitis B virus core antigen (HBc) with insertion of SpyCatcher at MIR
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex at 2.65A resolution
Poliovirus type 1 (strain Mahoney) native conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR1 complex bound to pNppA3 and AMPNPP
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from an insect cell expression system.
CryoEM structure of Enterococcus italicus Csm-crRNA complex bound to AMPNPP
H3/H4 di-tetrasome assembled on alpha-satellite DNA (open conformation).
Hepatitis B virus core antigen (HBc) with insertion of SpyCatcher at MIR and conjugated to single chain Fc domain
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a mammalian expression system.
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR complex bound to AMPNPP
CryoEM structure of Enterococcus italicus Csm-crRNA-CTR1 complex (4.3) bound to AMPNPP
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5 pAb from Rh.33203
Human liver phosphofructokinase-1 filament in the R-state conformation
The Anti-Mullerian Hormone prodomain in complex with the growth factor and 6E11 Fab in C2 symmetry
Cryo-EM structure of the full-length human P2X4 receptor in the ATP-bound desensitized state
Modular DNA origami building block for self-assembly: dimer with 6 base pair arm
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound pair from side 2 interaction
nsEM of HIV-1 BG505 SOSIP.v5.2 (N289/N241) Env in Complex with Week 38 gp120-Interface, N289, C3/V5, Base, and Anti-Immune Complex Epitope pAbs (NHP ID: Rh33203)
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 2C5
Cryo-EM structure of the apo TPP riboswitch embedded in an RNA scaffold
HIV 16055.v8.3 SOSIP Env in Complex with Base and N625 Epitope pAbs from Rabbit 2463
Human ACKR3 with C tail extended by 12 glycines phosphorylated by GRK5 in complex with Arrestin2
nsEM of HIV-1 16055 SOSIP.v8.3 Env in Complex with Week 22 N611, V2, and Base Epitope pAbs (Rabbit ID: 2464)
Cryo-EM structure of Sevenless extracellular domain (composite map of the dimer, pH 4.6)
Modular DNA origami building block for self-assembly: dimer with 10 base pair arm
COVA2-15 fragment antigen binding in complex with SARS-CoV-2 6P-mut7 S protein
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound pair from side 3 interaction
Cryo-EM structure of Sevenless extracellular domain (dimer, pH 6.6)
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 2C5
Cryo-EM structure of the full-length human P2X4 receptor in the apo closed state
Cryo-EM structure of BAY-1797 bound to the full-length human P2X4 receptor in the closed state
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5, gp120-Interface, and Anti-Immune Complex pAbs from Rh.33203
HIV CH505/BG505 SOSIP.v8.1 Env in Complex with V1/V3 Epitope and Anti-Immune Complex pAbs from Rabbit 2474
HIV 16055.v8.3 SOSIP Env in Complex with Base and N611 Epitope pAbs from Rabbit 2463
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound hexamer
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, twist corrected
Structure of the IFN-lambda4/IFN-lambdaR1/IL-10Rbeta receptor complex with an engineered IL-10Rbeta
Modular DNA origami building block for self-assembly: dimer with 10 base pair arm, negative binding angle
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 7C8
nsEM of HIV-1 16055 SOSIP.v8.3 Env in Complex with Week 6 Base pAb (Rabbit ID: 2464)
Cryo-EM structure of Sevenless in complex with Bride of Sevenless
HIV 16055.v8.3 SOSIP Env in Complex with V2 Epitope and Anti-Immune Complex pAbs from Rabbit 2464
DNA-origami colloid for self-assembly of tubules: (10,0) monomer, bound pair from side 1 interaction
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with gp120-Interface pAb from Rh.33203
Cryo-EM Structure of a group IIC intron embedded in an RNP scaffold
Kinetochore on isolated human mitotic chromosome under conditions of prolonged spindle detachment
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 3G6
Kinetochore on isolated human mitotic chromosome after degradation of CENP-N