Methyltransferase RmtC bound to the 30S ribosomal subunit
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ghu
Q-score: 0.259
Srinivas P, Nosrati M, Zelinskaya N, Dey D, Comstock LR, Dunham CM, Conn GL
bioRxiv (2023) [ Pubmed: 36993224 DOI: doi:10.1101/2023.03.13.532395 ]
- 30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
- 16s rrna (guanine(1405)-n(7))-methyltransferase (Complex from Proteus mirabilis)
- 30s ribosomal protein s5 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 16s rrna (guanine(1405)-n(7))-methyltransferase (32 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 16s rrna (496 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 16s rrna methyltransferase rmtc bound to the 30s ribosomal subunit (Complex from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6, non-modified isoform (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7zag
Q-score: 0.56
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Met-trnaimet, translation initiation factor 1a and translation initiation factor 5b (Complex from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- Rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s and 50s ribosomal proteins (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- Complex of 30s ribosomal subunit with initiation factor aif1a, the c-terminal domain of aif5b, mrna and trna (Complex)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA, aIF1A and aIF5B
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zah
Q-score: 0.591
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- Mrna (7 kDa, RNA from Pyrococcus abyssi GE5)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- Initiation complex with 30s ribosomal subunit,trna, mrna and initiation factors 1a and 5b (Complex)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met, translation initiation factor 1a and translation initiation factor 5b (Complex from Pyrococcus abyssi GE5)
- 30s and 50s ribosomal proteins (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 16s rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7zki
Q-score: 0.418
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Translation initiation factor 1a and probable translation initiation factor if-2 (Complex from Pyrococcus abyssi GE5)
- Trna-met (Complex from Escherichia coli)
- Methionine (149 Da, Ligand)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-aif5b-aif1a moiety of a pyrococcus abyssi translation initiation complex with 30s ribosomal subunit,trna, mrna and initiation factors 1a and 5b. (Complex)
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zai
Q-score: 0.587
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal subunit with initiation factor 1a, mrna and initiator trna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 16s rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 7zhg
Q-score: 0.696
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Rrna 16s (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (5 kDa, RNA from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- High resolution 30s ribosomal subunit with a fragment of mrna and trna (Complex)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- High resolution 30s ribosomal subunit with a fragment of mrna (Complex from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- Met-trnaimet (Complex from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 7ug7
Q-score: 0.536
Wieland M, Holm M, Rundlet EJ, Morici M, Koller TO, Maviza TP, Pogorevc D, Osterman IA, Muller R, Blanchard SC, Wilson DN
PNAS (2022) 119 pp. e2114214119-e2114214119 [ DOI: doi:10.1073/pnas.2114214119 Pubmed: 35500116 ]
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal subunit (Complex from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- Elongation factor g (77 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 16s rrna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- Ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Phenylalanine (165 Da, Ligand)
- Mrna (19 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Argyrin b (874 Da, Protein from Actinoplanes sp.)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- N-formylmethionine (177 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Trna-fmet (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- Spermidine (145 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal subunit (Complex from Escherichia coli)
- 50s ribosomal protein l1 (24 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- Trna-phe (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 70s ribosome in an intermediate state of translocation bound to ef-g(gdp) and argyrinb (Complex from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
T.thermophilus 30S ribosome with KsgA, class K1k2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7v2l
Q-score: 0.524
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- Rna methyltransferase (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase at position 2 (746 kDa, Complex)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K1k4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7v2m
Q-score: 0.478
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (771 kDa, Complex)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7v2n
Q-score: 0.446
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ DOI: doi:10.1021/acschembio.1c00732 Pubmed: 35316014 ]
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (710 kDa, Complex)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)