SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (NTD local reconstruction)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7n62
Q-score: 0.428
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ Pubmed: 33758863 DOI: doi:10.1101/2021.03.10.434840 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- C12c9 fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike in complex with 12-c9 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- C12c9 fab heavy chain (24 kDa, Protein from Homo sapiens)
SARS-CoV-2 Spike (2P) in complex with G32R7 Fab (RBD and NTD local reconstruction)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7n64
Q-score: 0.393
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ DOI: doi:10.1101/2021.03.10.434840 Pubmed: 33758863 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- G32r7 fab light chain (23 kDa, Protein from Homo sapiens)
- G32r7 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike in complex with g32r7 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Spike (2P) in complex with C12C11 Fab
Tong P, Gautam A, Windsor IW, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Storm N, Malsick LE, Honko AN, Lelis FJN, Habibi S, Jenni S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
Cell (2021) 184 pp. 4969-4980.e15 [ Pubmed: 34332650 DOI: doi:10.1016/j.cell.2021.07.025 ]
SARS-CoV-2 spike (6P) in complex with C93D9 Fab
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ Pubmed: 33758863 DOI: doi:10.1101/2021.03.10.434840 ]
SARS-CoV-2 spike (6P) in complex with C81C10 Fab
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ Pubmed: 33758863 DOI: doi:10.1101/2021.03.10.434840 ]
SARS-CoV-2 spike (2P) in complex with C12A2 Fab
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ DOI: doi:10.1101/2021.03.10.434840 Pubmed: 33758863 ]
The cryoEM map of EV71 mature viron in complex with intact antibody D5
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 3jau
Q-score: 0.088
Ye XH, Fan C, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y
PLoS Pathog (2016) 12 pp. e1005454-e1005454 [ Pubmed: 26938634 DOI: doi:10.1371/journal.ppat.1005454 ]
- Human enterovirus 71 (5 MDa, Virus from Human enterovirus 71)
- Antibody d5 (Protein from Homo sapiens)
- Ev71 mature viron in complex with intact antibody d5 (8 MDa, Sample)
The cryoEM map of EV71 mature viron in complex with the Fab fragment of antibody D5
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 3jau
Q-score: 0.125
Ye XH, Fan C, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y
PLoS Pathog (2016) 12 pp. e1005454-e1005454 [ Pubmed: 26938634 DOI: doi:10.1371/journal.ppat.1005454 ]
- Ev71 mature viron in complex with the fab fragment of antibody d5 (8 MDa, Sample)
- Antibody d5 (Protein from Homo sapiens)
- Human enterovirus 71 (5 MDa, Virus from Human enterovirus 71)
The cryoEM map of EV71 empty particle in complex with the Fab fragment of antibody D5
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 3jau
Q-score: 0.017
The cryoEM map of EV71 VLP in complex with intact antibody D5
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 3jau
Q-score: 0.016
Ye XH, Fan C, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y
PLoS Pathog (2016) 12 pp. e1005454-e1005454 [ Pubmed: 26938634 DOI: doi:10.1371/journal.ppat.1005454 ]
- Human enterovirus 71 (5 MDa, Virus from Human enterovirus 71)
- Ev71 vlp in complex with intact antibody d5 (8 MDa, Sample)