EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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dna/ polymerase AND electron_source:"FIELD EMISSION GUN" AND natural_source_ncbi_code:"1431340" AND author_name:"Yin W" AND xref_links:"chebi" AND author_orcid:"0000-0002-9210-1823" AND author_orcid:"0000-0002-4274-5698" AND author_orcid:"0000-0002-7988-5715" AND author_name:"Xu Y" AND author_name:"Tian G" AND author_name:"Luan X" AND xref_links:"uniprot" AND author_orcid:"0000-0002-6829-8144" AND author_orcid:"0000-0002-0908-711x" AND author_orcid:"0000-0003-0656-6315"

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EMD-30209

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Cryo-EM structure of the apo nsp12-nsp7-nsp8 complex

Release date: April 22, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7bv1
Q-score: 0.485

Yin W, Mao C, Luan X, Shen DD, Shen Q, Su H, Wang X, Zhou F, Zhao W, Gao M, Chang S, Xie YC, Tian G, Jiang HW, Tao SC, Shen J, Jiang Y, Jiang H, Xu Y, Zhang S, Zhang Y, Xu HE

Science (2020) 368 pp. 1499-1504 [ Pubmed: 32358203 DOI: doi:10.1126/science.abc1560 ]

Sample:

Rna-directed rna polymerase (109 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Zinc ion (65 Da, Ligand)
The apo nsp12-nsp7-nsp8 complex (Complex from SARS bat coronavirus)
Non-structural protein 8 (23 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Non-structural protein 7 (10 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)

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EMD-30210

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The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate form of Remdesivir(RTP)

Release date: April 22, 2020
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7bv2
Q-score: 0.607

Yin W, Mao C, Luan X, Shen DD, Shen Q, Su H, Wang X, Zhou F, Zhao W, Gao M, Chang S, Xie YC, Tian G, Jiang HW, Tao SC, Shen J, Jiang Y, Jiang H, Xu Y, Zhang S, Zhang Y, Xu HE

Science (2020) 368 pp. 1499-1504 [ DOI: doi:10.1126/science.abc1560 Pubmed: 32358203 ]

Sample:

Magnesium ion (24 Da, Ligand)
Non-structural protein 7 (10 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
[(2~{r},3~{s},4~{r},5~{r})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate (371 Da, Ligand)
Rna-directed rna polymerase (109 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Water (18 Da, Ligand)
Templete (9 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
Non-structural protein 8 (23 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Zinc ion (65 Da, Ligand)
Primer (6 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
The nsp12-nsp7-nsp8 complex bound to the template-primer rna and triphosphate form of remdesivir(rtp) (Complex from SARS bat coronavirus)
Pyrophosphate 2- (175 Da, Ligand)

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