Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8ef9
Q-score: 0.605
Li C, Zhu H, Jin S, Maksoud LM, Jain N, Sun J, Gao Y
Nucleic Acids Res (2023) 51 pp. 463-474 [ Pubmed: 36583344 DOI: doi:10.1093/nar/gkac1201 ]
- Dna (5'-d(*ap*gp*cp*ap*tp*cp*cp*gp*tp*ap*gp*(2da))-3') (5 kDa, DNA from Lates calcarifer)
- Ternary complex of lates calcarifer dna polymerase theta with duplex dna and incoming nucleotide (Complex from Lates calcarifer)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Dna polymerase theta (95 kDa, Protein from Lates calcarifer)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(*ap*gp*cp*tp*cp*tp*ap*cp*gp*gp*ap*tp*gp*c)-3') (8 kDa, DNA from Lates calcarifer)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8efc
Q-score: 0.492
Li C, Zhu H, Jin S, Maksoud LM, Jain N, Sun J, Gao Y
Nucleic Acids Res (2023) 51 pp. 463-474 [ Pubmed: 36583344 DOI: doi:10.1093/nar/gkac1201 ]
- Ternary complex of lates calcarifer dna polymerase theta with duplex dna and incoming nucleotide (Complex from Lates calcarifer)
- Dna (5'-d(*ap*cp*tp*gp*tp*gp*ap*gp*gp*cp*ap*tp*cp*cp*gp*tp*ap*gp*(2da))-3') (6 kDa, DNA from Lates calcarifer)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Dna polymerase theta (95 kDa, Protein from Lates calcarifer)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(*ap*gp*cp*tp*cp*tp*ap*cp*gp*gp*ap*tp*gp*cp*cp*tp*cp*ap*cp*ap*g)-3') (8 kDa, DNA from Lates calcarifer)
Structure of Lates calcarifer DNA polymerase theta polymerase domain with hairpin DNA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8efk
Q-score: 0.525
Li C, Zhu H, Jin S, Maksoud LM, Jain N, Sun J, Gao Y
Nucleic Acids Res (2023) 51 pp. 463-474 [ Pubmed: 36583344 DOI: doi:10.1093/nar/gkac1201 ]
- Lates calcarifer dna polymerase theta (95 kDa, Protein from Lates calcarifer)
- Magnesium ion (24 Da, Ligand)
- Ternary complex of lates calcarifer dna polymerase theta with duplex dna and incoming nucleotide (Complex from Lates calcarifer)
- 2',3'-dideoxyadenosine triphosphate (475 Da, Ligand)
- Dna (5'-d(p*tp*tp*tp*tp*gp*gp*cp*tp*tp*tp*tp*gp*cp*cp*(2da))-3') (7 kDa, DNA from Lates calcarifer)
Cryo-EM structure of human TPH2 tetramer
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7wiy
Q-score: 0.588
Zhu K, Liu C, Gao Y, Lu J, Wang D, Zhang H
Front Pharmacol (2022) 13 pp. 907437-907437 [ Pubmed: 36046836 DOI: doi:10.3389/fphar.2022.907437 ]
- Fe (iii) ion (55 Da, Ligand)
- Tryptophan 5-hydroxylase 2 (56 kDa, Protein from Homo sapiens)
- Imidazole (69 Da, Ligand)
- Complex of human tph2 with bound fe2+ and imidazole (Complex from Homo sapiens)
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the apo state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7y9t
Q-score: 0.528
Yang Z, Xia J, Hong J, Zhang C, Wei H, Ying W, Sun C, Sun L, Mao Y, Gao Y, Tan S, Friml J, Li D, Liu X, Sun L
Nature (2022) 609 pp. 611-615 [ Pubmed: 35917925 DOI: doi:10.1038/s41586-022-05143-9 ]
- Nanobody (13 kDa, Protein from Escherichia coli)
- Auxin efflux carrier component 1 (67 kDa, Protein from Arabidopsis thaliana)
- Atpin1 (Complex from Escherichia coli)
- Atpin1 in complex with a nanobody (Complex from Arabidopsis thaliana)
- Nanobody (Complex)
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the NPA-bound state
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7y9u
Q-score: 0.492
Yang Z, Xia J, Hong J, Zhang C, Wei H, Ying W, Sun C, Sun L, Mao Y, Gao Y, Tan S, Friml J, Li D, Liu X, Sun L
Nature (2022) 609 pp. 611-615 [ Pubmed: 35917925 DOI: doi:10.1038/s41586-022-05143-9 ]
- Nanobody (13 kDa, Protein from Escherichia coli)
- Atpin1 in complex with a nanobody and npa (Complex from Arabidopsis thaliana)
- Auxin efflux carrier component 1 (67 kDa, Protein from Arabidopsis thaliana)
- Atpin1 (Complex from Escherichia coli)
- 2-(naphthalen-1-ylcarbamoyl)benzoic acid (291 Da, Ligand)
- Nanobody (Complex)
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the IAA-bound state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7y9v
Q-score: 0.499
Yang Z, Xia J, Hong J, Zhang C, Wei H, Ying W, Sun C, Sun L, Mao Y, Gao Y, Tan S, Friml J, Li D, Liu X, Sun L
Nature (2022) 609 pp. 611-615 [ Pubmed: 35917925 DOI: doi:10.1038/s41586-022-05143-9 ]
- Nanobody (13 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 1h-indol-3-ylacetic acid (175 Da, Ligand)
- Atpin1 in complex with a nanobody and npa (Complex from Arabidopsis thaliana)
- Auxin efflux carrier component 1 (67 kDa, Protein from Arabidopsis thaliana)
- Atpin1 (Complex from Escherichia coli)
- Nanobody (Complex)
Cryo-EM structure of Omicron RBD complexed with ACE2 and 304 Fab
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7xcp
Q-score: 0.457
Zhao Z, Zhou J, Tian M, Huang M, Liu S, Xie Y, Han P, Bai C, Han P, Zheng A, Fu L, Gao Y, Peng Q, Li Y, Chai Y, Zhang Z, Zhao X, Song H, Qi J, Wang Q, Wang P, Gao GF
Nat Commun (2022) 13 pp. 4958-4958 [ DOI: doi:10.1038/s41467-022-32665-7 ]
- Cryoem structure of omicron rbd complexed with ace2 and 304 fab (Complex)
- Heavy chain of 304 fab (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Processed angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Lignt chain of 304 fab (23 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Omicron rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 304 fab (Complex from Homo sapiens)
- Ace2 (Complex from Homo sapiens)
Cryo-EM structure of PEIP-Bs_enolase complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xml
Q-score: 0.468
Zhang K, Li S, Wang Y, Wang Z, Mulvenna N, Yang H, Zhang P, Chen H, Li Y, Wang H, Gao Y, Wigneshweraraj S, Matthews S, Zhang K, Liu B
Cell Rep (2022) 40 pp. 111026-111026 [ Pubmed: 35793626 DOI: doi:10.1016/j.celrep.2022.111026 ]
- Peip (Complex from Bacillus phage SP01)
- Peip-bs_enolase complex (100 kDa, Complex)
- Bs_enolase (Complex from Bacillus subtilis (strain 168))
- Putative gene 60 protein (8 kDa, Protein from Bacillus phage SP01)
- Magnesium ion (24 Da, Ligand)
- Enolase (46 kDa, Protein from Bacillus subtilis (strain 168))
Oxytocin receptor (OTR) bound to oxytocin in complex with a heterotrimeric Gq protein
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7ryc
Q-score: 0.551
Meyerowitz JG, Robertson MJ, Barros-Alvarez X, Panova O, Nwokonko RM, Gao Y, Skiniotis G
Nat Struct Mol Biol (2022) 29 pp. 274-281 [ Pubmed: 35241813 DOI: doi:10.1038/s41594-022-00728-4 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Oxytocin receptor (49 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Minigq (Complex from Homo sapiens)
- Oxytocin receptor signaling complex with oxytocin and minigq and an scfv (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2, guanine nucleotide-binding protein g(i) subunit alpha-2,guanine nucleotide-binding protein g(s) subunit alpha isoforms short (36 kDa, Protein from Homo sapiens)
- Oxytocin (1 kDa, Protein from Homo sapiens)
- Oxytocin (Complex from Homo sapiens)
- Scfv16 (27 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Oxytocin receptor (Complex from Homo sapiens)