Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ipb
Q-score: 0.466
Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T
Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]
- 60s ribosomal protein ul30 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el40 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el14 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul22 (19 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es6 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el24 (18 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us3 (25 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul29 (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es25 (12 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul23 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es30 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el33 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us10 (14 kDa, Protein from Triticum aestivum)
- Rack1 (36 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el34 (13 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el13 (24 kDa, Protein from Triticum aestivum)
- 60s ribosomal rna (1 MDa, RNA from Triticum aestivum)
- 60s ribosomal protein el27 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el39 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us17 (17 kDa, Protein from Triticum aestivum)
- 5s ribosomal rna (38 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein ul6 (21 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es4 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us7 (22 kDa, Protein from Triticum aestivum)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein us14 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el29 (6 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es28 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es26 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us5 (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el6 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es8 (25 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el38 (8 kDa, Protein from Triticum aestivum)
- Mrna (2 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein ul15 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el43 (10 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us13 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us12 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es19 (17 kDa, Protein from Triticum aestivum)
- Trnai (24 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul3 (44 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es24 (15 kDa, Protein from Triticum aestivum)
- Wheat 80s ribosome pausing on aug-stop with cycloheximide (Complex from Triticum aestivum)
- 60s ribosomal protein el20 (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul4 (44 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el30 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us2 (33 kDa, Protein from Triticum aestivum)
- 5.8s ribosomal rna (51 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein us11 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul24 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el41 (3 kDa, Protein from Oryza sativa)
- 40s ribosomal protein us19 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es1 (30 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el18 (21 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein us4 (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us8 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul18 (34 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us9 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us15 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es27 (9 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el19 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es17 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el32 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es21 (9 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul2 (28 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es10 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul13 (23 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el22 (14 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein el42 (12 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul16 (24 kDa, Protein from Triticum aestivum)
- 18s ribosomal rna (583 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein es7 (22 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el37 (10 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el36 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein el8 (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el21 (18 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el31 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el15 (24 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el28 (16 kDa, Protein from Triticum aestivum)
H. neapolitanus carboxysomal rubisco/CsoSCA-peptide (1-50)complex
Resolution: 2.07 Å
EM Method: Single-particle
Fitted PDBs: 7snv
Q-score: 0.771
Blikstad C, Dugan EJ, Laughlin TG, Turnsek JB, Liu MD, Shoemaker SR, Vogiatzi N, Remis JP, Savage DF
PNAS (2023) 120 pp. e2308600120-e2308600120 [ DOI: doi:10.1073/pnas.2308600120 Pubmed: 37862384 ]
- Ribulose bisphosphate carboxylase large chain (e.c.4.1.1.39), ribulose bisphosphate carboxylase small chain (e.c.4.1.1.39) (Complex from Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
- H. neapolitanus carboxysomal rubisco/csosca-peptide (1-50)complex (533 kDa, Complex)
- Ribulose bisphosphate carboxylase large chain (53 kDa, Protein from Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
- Ribulose bisphosphate carboxylase small chain (12 kDa, Protein from Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
- Carboxysome shell carbonic anhydrase (5 kDa, Protein from Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
- Water (18 Da, Ligand)
- Carboxysome shell carbonic anhydrase (e.c.4.2.1.1) (Complex)
3 A CRYO-EM STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS FERRITIN FROM TIMEPIX3 detector
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8aey
Q-score: 0.529
van Schayck JP, Zhang Y, Knoops K, Peters PJ, Ravelli RBG
Microsc Microanal (2023) [ DOI: doi:10.1093/micmic/ozac009 ]
- Mycobacterium tuberculosis ferritin (Complex from Mycobacterium tuberculosis H37Rv)
- Water (18 Da, Ligand)
- Ferritin bfrb (20 kDa, Protein from Mycobacterium tuberculosis H37Rv)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ucg
Q-score: 0.411
Barnes CO, Schoofs T, Gnanapragasam PNP, Golijanin J, Huey-Tubman KE, Gruell H, Schommers P, Suh-Toma N, Lee YE, Cetrulo Lorenzi JC, Piechocka-Trocha A, Scheid JF, West Jr AP, Walker BD, Seaman MS, Klein F, Nussenzweig MC, Bjorkman PJ
Sci Adv (2022) 8 pp. eabp8155-eabp8155 [ Pubmed: 35960796 DOI: doi:10.1126/sciadv.abp8155 ]
- Complex of du422 sosip trimer bound to 10-1074 and bg24 fab fragments (650 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 10-1074 fab heavy chain (26 kDa, Protein from Homo sapiens)
- Bg24 light chain (21 kDa, Protein from Homo sapiens)
- Bg24 cdrh2-v2 fab heavy chain (25 kDa, Protein from Homo sapiens)
- 10-1074 light chain (23 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp160 (56 kDa, Protein from Human immunodeficiency virus 1)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7cpj
Q-score: 0.502
Fujita T, Yokoyama T, Shirouzu M, Taguchi H, Ito T, Iwasaki S
RNA (2022) 28 pp. 290-302 [ Pubmed: 34906996 DOI: doi:10.1261/rna.078188.120 ]
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli KTE112)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli KTE73)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli MS 198-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli 2.3916)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli UMEA 3718-1)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli 2.3916)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli 907713)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli MS 117-3)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli KTE112)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli 99.0741)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli 4.0522)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli O26:H11)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli O121:H19)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli 908573)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli KTE75)
- Isoleucine (131 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli KTE112)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli 99.0741)
- Proline (115 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli 113303)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli HVH 87 (4-5977630))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli 3-373-03 S4 C2)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli O177)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli KTE73)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli 2362-75)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli O7:K1 (strain IAI39 / ExPEC))
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli KTE64)
- P/p trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli G3/10)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli H461)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli M863)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli DEC1D)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli MS 84-1)
- Ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- Mrna (910 Da, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli TA054)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli H420)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7nwg
Q-score: 0.406
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ Pubmed: 34157102 DOI: doi:10.1093/nar/gkab532 ]
- Ul15 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Rabbit)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Rabbit)
- El29 (26 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- Ribosomal protein s15a (15 kDa, Protein from Rabbit)
- 60s ribosomal protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Rabbit)
- 40s ribosomal protein s9 (22 kDa, Protein from Rabbit)
- L22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (16 kDa, Protein from Rabbit)
- L18 (21 kDa, Protein from Oryctolagus cuniculus)
- S19 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s11 (18 kDa, Protein from Rabbit)
- L8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (23 kDa, Protein from Rabbit)
- 40s ribosomal protein s26 (13 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (29 kDa, Protein from Rabbit)
- Es31 (7 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (30 kDa, Protein from Rabbit)
- Mammalian pre-termination 80s ribosome with hybrid-p/e and -a/p site trnas bound by blasticidin s. (3 MDa, Complex from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein sa (32 kDa, Protein from Rabbit)
- El31 (12 kDa, Protein from Rabbit)
- Ribosomal protein el43 (12 kDa, Protein from Rabbit)
- P/e-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (13 kDa, Protein from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Us11 (18 kDa, Protein from Rabbit)
- Ribosomal protein s5 (23 kDa, Protein from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- Ribosomal protein es7 (21 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- Ul12 (21 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- L7a (27 kDa, Protein from Rabbit)
- El14 (13 kDa, Protein from Rabbit)
- 40s ribosomal protein s2 (27 kDa, Protein from Bovine)
- Mrna (5 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Rabbit)
- 60s ribosomal protein l19 (23 kDa, Protein from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- L13 (24 kDa, Protein from Rabbit)
- Ribosomal protein es25 (22 kDa, Protein from Rabbit)
- 40s ribosomal protein s3 (31 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s10 (17 kDa, Protein from Rabbit)
- El30 (12 kDa, Protein from Rabbit)
- S4 (29 kDa, Protein from Oryctolagus cuniculus)
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- Blasticidin s (422 Da, Ligand)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- El42 (16 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- El33 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s24 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein s28 (7 kDa, Protein from Rabbit)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- Ul4 (47 kDa, Protein from Rabbit)
- A/p-site trna (23 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l11 (20 kDa, Protein from Rabbit)
- Ribosomal protein s16 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- L9 (21 kDa, Protein from Rabbit)
- 18s ribosomal rna (586 kDa, RNA from Oryctolagus cuniculus)
- Sec61beta (1 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Rabbit)
- 40s ribosomal protein s20 (14 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
Cryo-EM Structure of Escherichia coli 2-oxoglutarate dehydrogenase E1 component sucA
Resolution: 4.08 Å
EM Method: Single-particle
Fitted PDBs: 6vef
Q-score: 0.409
To Be Published
- Escherichia coli 2-oxoglutarate dehydrogenase e1 component suca (Complex from Escherichia coli K-12)
- 2-oxoglutarate dehydrogenase e1 component (94 kDa, Protein from Escherichia coli K-12)
- Oxaloacetate ion (131 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
Escherichia coli AdhE structure in its extended conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6tqh
Q-score: 0.46
Pony P, Rapisarda C, Terradot L, Marza E, Fronzes R
Nat Commun (2020) 11 pp. 1426-1426 [ DOI: doi:10.1038/s41467-020-15214-y Pubmed: 32188856 ]
- Aldehyde-alcohol dehydrogenase (96 kDa, Protein from Escherichia coli)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Adhe dimer in complex with nad+ and fe2+ (Complex from Escherichia coli)
Escherichia coli AdhE structure in its compact conformation
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6tqm
Q-score: -0.023
Pony P, Rapisarda C, Terradot L, Marza E, Fronzes R
Nat Commun (2020) 11 pp. 1426-1426 [ DOI: doi:10.1038/s41467-020-15214-y Pubmed: 32188856 ]
- Adhe dimer in complex with nadh and fe2+ (Complex from Escherichia coli (strain K12))
- Aldehyde-alcohol dehydrogenase (96 kDa, Protein from Escherichia coli K-12)
- Fe (iii) ion (55 Da, Ligand)
- 1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
Cryo-EM structure of porcine epidemic diarrhea virus (PEDV) spike protein
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6vv5
Q-score: 0.474
Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB
Structure (2021) 29 pp. 385-392.e5 [ Pubmed: 33378641 DOI: doi:10.1016/j.str.2020.12.003 ]
- Spike glycoprotein (148 kDa, Protein from Porcine epidemic diarrhea virus)
- Palmitoleic acid (254 Da, Ligand)
- Porcine epidemic diarrhea virus spike protein (600 kDa, Complex from Porcine epidemic diarrhea virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)