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natural_source_ncbi_code:"3702" AND author_name:"Zhang X" AND release_date:[2022-01-01T00:00:00Z TO 2022-12-31T23:59:59Z]

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EMD-32462

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Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
Phylloquinone (450 Da, Ligand)
Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
Chlorophyll a (893 Da, Ligand)
Chlorophyll b (907 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)

[Show more]

EMD-32463

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Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Psi complex in the ndh-psi supercomplex of arabidopsis (Complex from Arabidopsis thaliana)
Phylloquinone (450 Da, Ligand)
Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
Chlorophyll a (893 Da, Ligand)
Chlorophyll b (907 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
Iron/sulfur cluster (351 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)

[Show more]

EMD-32464

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Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7wff
Q-score: 0.442

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from Arabidopsis thaliana)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
Ndh dependent flow 6 (18 kDa, Protein from Arabidopsis thaliana)
Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from Arabidopsis thaliana)
Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from Arabidopsis thaliana)
Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from Arabidopsis thaliana)
Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)

[Show more]

EMD-32465

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Subcomplexes A and E in NDH complex from Arabidopsis

Release date: March 16, 2022
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7wfg
Q-score: 0.232

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Ndht (10 kDa, Protein from Arabidopsis thaliana)
Iron/sulfur cluster (351 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
Ndho (17 kDa, Protein from Arabidopsis thaliana)
Subcomplex a and e in ndh complex from arabidopsis (Complex from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from Arabidopsis thaliana)

[Show more]

EMD-32477

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Cyclic electron transport supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ Pubmed: 35123031 DOI: doi:10.1016/j.molp.2022.01.020 ]

Sample:

Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from thale cress)
Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from thale cress)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from thale cress)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from thale cress)
Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
Beta-carotene (536 Da, Ligand)
Phylloquinone (450 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from thale cress)
Ndho (17 kDa, Protein from thale cress)
Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from thale cress)
Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from thale cress)
Ndht (10 kDa, Protein from thale cress)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from thale cress)
Iron/sulfur cluster (351 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from thale cress)
Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from thale cress)
Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from thale cress)
Chlorophyll b (907 Da, Ligand)
Ndh dependent flow 6 (18 kDa, Protein from thale cress)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from thale cress)
Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from thale cress)
Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
Chlorophyll a (893 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from thale cress)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from thale cress)

[Show more]

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EMDB [5]

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