Cryo-EM structure of OSCA3.1-GDN state
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8xw0
Q-score: 0.516
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the NPA-bound state
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7y9u
Q-score: 0.492
Yang Z, Xia J, Hong J, Zhang C, Wei H, Ying W, Sun C, Sun L, Mao Y, Gao Y, Tan S, Friml J, Li D, Liu X, Sun L
Nature (2022) 609 pp. 611-615 [ Pubmed: 35917925 DOI: doi:10.1038/s41586-022-05143-9 ]
- Nanobody (13 kDa, Protein from Escherichia coli)
- Atpin1 in complex with a nanobody and npa (Complex from Arabidopsis thaliana)
- Auxin efflux carrier component 1 (67 kDa, Protein from Arabidopsis thaliana)
- Atpin1 (Complex from Escherichia coli)
- 2-(naphthalen-1-ylcarbamoyl)benzoic acid (291 Da, Ligand)
- Nanobody (Complex)
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the IAA-bound state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7y9v
Q-score: 0.499
Yang Z, Xia J, Hong J, Zhang C, Wei H, Ying W, Sun C, Sun L, Mao Y, Gao Y, Tan S, Friml J, Li D, Liu X, Sun L
Nature (2022) 609 pp. 611-615 [ Pubmed: 35917925 DOI: doi:10.1038/s41586-022-05143-9 ]
- Nanobody (13 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 1h-indol-3-ylacetic acid (175 Da, Ligand)
- Atpin1 in complex with a nanobody and npa (Complex from Arabidopsis thaliana)
- Auxin efflux carrier component 1 (67 kDa, Protein from Arabidopsis thaliana)
- Atpin1 (Complex from Escherichia coli)
- Nanobody (Complex)
Outward-facing auxin bound form of auxin transporter PIN8
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7qpa
Q-score: 0.505
Ung KL, Winkler M, Schulz L, Kolb M, Janacek DP, Dedic E, Stokes DL, Hammes UZ, Pedersen BP
Nature (2022) 609 pp. 605-610 [ Pubmed: 35768502 DOI: doi:10.1038/s41586-022-04883-y ]
- 1,2-dilinoleoyl-sn-glycero-3-phosphocholine (782 Da, Ligand)
- Iaa bound form of pin8 (81 kDa, Complex from Arabidopsis thaliana)
- Water (18 Da, Ligand)
- Auxin efflux carrier component 8 (41 kDa, Protein from Arabidopsis thaliana)
- 1h-indol-3-ylacetic acid (175 Da, Ligand)
Inward-facing NPA bound form of auxin transporter PIN8
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 7qpc
Q-score: 0.501
Ung KL, Winkler M, Schulz L, Kolb M, Janacek DP, Dedic E, Stokes DL, Hammes UZ, Pedersen BP
Nature (2022) 609 pp. 605-610 [ DOI: doi:10.1038/s41586-022-04883-y Pubmed: 35768502 ]
- Auxin efflux carrier component 8 (41 kDa, Protein from Arabidopsis thaliana)
- Water (18 Da, Ligand)
- 1,2-dilinoleoyl-sn-glycero-3-phosphocholine (782 Da, Ligand)
- 2-(naphthalen-1-ylcarbamoyl)benzoic acid (291 Da, Ligand)
- Npa-form of pin8 (81 kDa, Complex from Arabidopsis thaliana)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7mk2
Q-score: 0.453
Kumar S, Zavaliev R, Wu Q, Zhou Y, Cheng J, Dillard L, Powers J, Withers J, Zhao J, Guan Z, Borgnia MJ, Bartesaghi A, Dong X, Zhou P
Nature (2022) 605 pp. 561-566 [ DOI: doi:10.1038/s41586-022-04699-w Pubmed: 35545668 ]
- Npr1 dimer (Complex from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Regulatory protein npr1 (67 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the (TGA3)2-(NPR1)2-(TGA3)2 complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7tac
Q-score: 0.329
Kumar S, Zavaliev R, Wu Q, Zhou Y, Cheng J, Dillard L, Powers J, Withers J, Zhao J, Guan Z, Borgnia MJ, Bartesaghi A, Dong X, Zhou P
Nature (2022) 605 pp. 561-566 [ DOI: doi:10.1038/s41586-022-04699-w Pubmed: 35545668 ]
- Regulatory protein npr1 (67 kDa, Protein from Arabidopsis thaliana)
- (tga3)2-(npr1)2-(tga3)2 complex (Complex from Arabidopsis thaliana)
- Palmitic acid (256 Da, Ligand)
- Transcription factor tga3 (36 kDa, Protein from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
CryoEM structure of the (NPR1)2-(TGA3)2 complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7tad
Q-score: 0.357
Kumar S, Zavaliev R, Wu Q, Zhou Y, Cheng J, Dillard L, Powers J, Withers J, Zhao J, Guan Z, Borgnia MJ, Bartesaghi A, Dong X, Zhou P
Nature (2022) 605 pp. 561-566 [ DOI: doi:10.1038/s41586-022-04699-w Pubmed: 35545668 ]
- Regulatory protein npr1 (67 kDa, Protein from Arabidopsis thaliana)
- Palmitic acid (256 Da, Ligand)
- Transcription factor tga3 (36 kDa, Protein from Arabidopsis thaliana)
- (npr1)2-(tga3)2 complex (Complex from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
Arabidopsis thaliana acetohydroxyacid synthase complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6u9h
Q-score: 0.366
Lonhienne T, Low YS, Garcia MD, Croll T, Gao Y, Wang Q, Brillault L, Williams CM, Fraser JA, McGeary RP, West NP, Landsberg MJ, Rao Z, Schenk G, Guddat LW
Nature (2020) 586 pp. 317-321 [ DOI: doi:10.1038/s41586-020-2514-3 Pubmed: 32640464 ]
- Thiamine diphosphate (425 Da, Ligand)
- Acetolactate synthase, chloroplastic (64 kDa, Protein from Arabidopsis thaliana)
- Acetolactate synthase small subunit 2, chloroplastic (53 kDa, Protein from Arabidopsis thaliana)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Acetohydroxyacid synthase quaternary complex (720 kDa, Complex from Arabidopsis thaliana)
Arabidopsis thaliana acetohydroxyacid synthase complex with valine bound
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 6vz8
Q-score: 0.392
Lonhienne T, Low YS, Garcia MD, Croll T, Gao Y, Wang Q, Brillault L, Williams CM, Fraser JA, McGeary RP, West NP, Landsberg MJ, Rao Z, Schenk G, Guddat LW
Nature (2020) 586 pp. 317-321 [ DOI: doi:10.1038/s41586-020-2514-3 Pubmed: 32640464 ]
- Thiamine diphosphate (425 Da, Ligand)
- Valine (117 Da, Ligand)
- Acetolactate synthase small subunit 2, chloroplastic (53 kDa, Protein from Arabidopsis thaliana)
- Acetolactate synthase, chloroplastic (64 kDa, Protein from Arabidopsis thaliana)
- Acetohydroxyacid synthase quaternary complex with valine bound (720 kDa, Complex from Arabidopsis thaliana)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Magnesium ion (24 Da, Ligand)