Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8wm7
Q-score: 0.475
Li B, Wang XQ, Li QY, Xu D, Li J, Hou WT, Chen Y, Jiang YL, Zhou CZ
PNAS (2024) 121 pp. e2318320121-e2318320121 [ Pubmed: 38457518 DOI: doi:10.1073/pnas.2318320121 ]
- Nitrogen regulatory protein p-ii (13 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (31 kDa, Protein from Nostoc sp.)
- Nitrate transport atp-binding protein (76 kDa, Protein from Nostoc sp.)
- Nitrate transport permease protein (30 kDa, Protein from Nostoc sp.)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Complex of nitrate transporter nrtbcd with signling protein pii (Complex from Nostoc sp. PCC 7120 = FACHB-418)
Cryo-EM structure of the alpha-carboxysome shell vertex from Prochlorococcus MED4
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8wxb
Q-score: 0.337
Zhou RQ, Jiang YL, Li H, Hou P, Kong WW, Deng JX, Chen Y, Zhou CZ, Zeng Q
Nat Plants (2024) 10 pp. 661-672 [ DOI: doi:10.1038/s41477-024-01660-9 Pubmed: 38589484 ]
- Major carboxysome shell protein csos1 (10 kDa, Protein from Prochlorococcus sp. MED4)
- The shell vertex of alpha-carboxysome (3 MDa, Complex from Prochlorococcus sp. MED4)
- Carboxysome assembly protein csos2 (82 kDa, Protein from Prochlorococcus sp. MED4)
- Carboxysome shell vertex protein csos4a (9 kDa, Protein from Prochlorococcus sp. MED4)
Cryo-EM structure of the full transcription activation complex NtcA-NtcB-TAC
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8h3v
Q-score: 0.191
Han SJ, Jiang YL, You LL, Shen LQ, Wu X, Yang F, Cui N, Kong WW, Sun H, Zhou K, Meng HC, Chen ZP, Chen Y, Zhang Y, Zhou CZ
Nat Struct Mol Biol (2024) 31 pp. 293-299 [ DOI: doi:10.1038/s41594-023-01149-7 Pubmed: 38177666 ]
- Full transcription activation complex with two activators ntca and ntcb (718 kDa, Complex from Anabaena)
- Ntca (24 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Rna polymerase sigma factor siga (45 kDa, Protein from Anabaena)
- Ntcb (34 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit beta' (147 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit gamma (70 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit beta (126 kDa, Protein from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
Cryo-EM structure of the transcription activation complex NtcA-TAC
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8h40
Q-score: 0.353
Han SJ, Jiang YL, You LL, Shen LQ, Wu X, Yang F, Cui N, Kong WW, Sun H, Zhou K, Meng HC, Chen ZP, Chen Y, Zhang Y, Zhou CZ
Nat Struct Mol Biol (2024) 31 pp. 293-299 [ Pubmed: 38177666 DOI: doi:10.1038/s41594-023-01149-7 ]
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Anabaena)
- Transcription activation complex with the global regulator ntca (580 kDa, Complex from Anabaena)
- Dna-directed rna polymerase subunit gamma (70 kDa, Protein from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Ntca (24 kDa, Protein from Anabaena)
- Rna polymerase sigma factor siga (45 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Anabaena)
- Dna (125-mer) (38 kDa, DNA from Anabaena)
- Dna-directed rna polymerase subunit beta' (147 kDa, Protein from Anabaena)
- Dna-directed rna polymerase subunit beta (126 kDa, Protein from Anabaena)
Cyanophage Pam3 portal-adaptor
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8hds
Q-score: 0.47
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ DOI: doi:10.1073/pnas.2213727120 Pubmed: 36656854 ]
- Pam3 adaptor protein (13 kDa, Protein from uncultured cyanophage)
- Pam3 portal protein (69 kDa, Protein from uncultured cyanophage)
- Uncultured cyanophage (Virus from uncultured cyanophage)
Cyanophage Pam3 capsid asymmetric unit
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 8hdt
Q-score: 0.537
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ DOI: doi:10.1073/pnas.2213727120 Pubmed: 36656854 ]
- Major capsid (34 kDa, Protein from uncultured cyanophage)
- Cement (17 kDa, Protein from uncultured cyanophage)
- Uncultured cyanophage (Virus from uncultured cyanophage)
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8hdw
Q-score: 0.516
Yang F, Jiang YL, Zhang JT, Zhu J, Du K, Yu RC, Wei ZL, Kong WW, Cui N, Li WF, Chen Y, Li Q, Zhou CZ
PNAS (2023) 120 pp. e2213727120-e2213727120 [ DOI: doi:10.1073/pnas.2213727120 Pubmed: 36656854 ]
- Pam3 sheath protein (41 kDa, Protein from uncultured cyanophage)
- Pam3 tube (15 kDa, Protein from uncultured cyanophage)
- Uncultured cyanophage (Virus from uncultured cyanophage)
Cryo-EM structure of RbcL8-RbcS4 from Anabaena sp. PCC 7120
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6lrs
Q-score: 0.44
Xia LY, Jiang YL, Kong WW, Sun H, Li WF, Chen Y, Zhou CZ
Nat Plants (2020) 6 pp. 708-717 [ DOI: doi:10.1038/s41477-020-0665-8 Pubmed: 32451445 ]
- The complex of rbcl8-rbcs4 (900 kDa, Complex from Nostoc sp. PCC 7120)
- Ribulose bisphosphate carboxylase small chain (12 kDa, Protein from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
- Ribulose bisphosphate carboxylase large chain (53 kDa, Protein from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
Cryo-EM structure of RuBisCO-Raf1 from Anabaena sp. PCC 7120
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6lrr
Q-score: 0.488
Xia LY, Jiang YL, Kong WW, Sun H, Li WF, Chen Y, Zhou CZ
Nat Plants (2020) 6 pp. 708-717 [ Pubmed: 32451445 DOI: doi:10.1038/s41477-020-0665-8 ]
- All5250 protein (18 kDa, Protein from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
- Ternary complex of rubisco with the chaperone raf1 (900 kDa, Complex from Nostoc sp. PCC 7120)
- Ribulose bisphosphate carboxylase small chain (12 kDa, Protein from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
- Ribulose bisphosphate carboxylase large chain (53 kDa, Protein from Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
Capsid structure of a freshwater cyanophage Siphoviridae Mic1
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 6j3q
Q-score: 0.502
Jin H, Jiang YL, Yang F, Zhang JT, Li WF, Zhou K, Ju J, Chen Y, Zhou CZ
Structure (2019) 27 pp. 1508- [ Pubmed: 31378451 DOI: doi:10.1016/j.str.2019.07.003 ]
- Major capsid protein (37 kDa, Protein from Microcystis phage Mic1)
- Cement protein (10 kDa, Protein from Microcystis phage Mic1)
- Microcystis phage mic1 (Virus from Microcystis phage Mic1)