EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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primary_citation_author:"Venugopal H" AND database:"EMDB" AND microscope_name:"TFS GLACIOS"

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EMD-42023

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GPR3 Orphan G-coupled Protein Receptor in complex with Dominant Negative Gs.

Release date: March 6, 2024
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8u8f
Q-score: 0.422

Russell IC, Zhang X, Bumbak F, McNeill SM, Josephs TM, Leeming MG, Christopoulos G, Venugopal H, Flocco MM, Sexton PM, Wootten D, Belousoff MJ

Biochemistry (2024) 63 pp. 625-631 [ DOI: doi:10.1021/acs.biochem.3c00647 Pubmed: 38376112 ]

Sample:

Active state, gpr3 complex with dominant negative g-alphas. (Complex from Homo sapiens)
Palmitic acid (256 Da, Ligand)
Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (45 kDa, Protein from Homo sapiens)
G-protein coupled receptor 3 (41 kDa, Protein from Homo sapiens)

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EMD-21872

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Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Release date: June 3, 2020
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6wqn
Q-score: 0.601

Wright A, Deane-Alder K, Marschall E, Bamert R, Venugopal H, Lithgow T, Lupton DW, Belousoff MJ

Acs Pharmacol Transl Sci (2020) 3 pp. 425-432 [ Pubmed: 32566908 DOI: doi:10.1021/acsptsci.0c00041 ]

Sample:

50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal subunit (Complex from Staphylococcus aureus)
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus)
5s rrna (36 kDa, RNA from Staphylococcus aureus)
50s ribosomal protein l27 (9 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
Contezolid (408 Da, Ligand)
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
23s rrna (946 kDa, RNA from Staphylococcus aureus)
50s ribosomal protein l34 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l25 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)

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EMD-21873

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Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Release date: June 3, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6wqq
Q-score: 0.571

Wright A, Deane-Alder K, Marschall E, Bamert R, Venugopal H, Lithgow T, Lupton DW, Belousoff MJ

Acs Pharmacol Transl Sci (2020) 3 pp. 425-432 [ Pubmed: 32566908 DOI: doi:10.1021/acsptsci.0c00041 ]

Sample:

50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l25 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l27 (9 kDa, Protein from Staphylococcus aureus)
Radezolid (438 Da, Ligand)
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal subunit (Complex from Staphylococcus aureus)
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l34 (6 kDa, Protein from Staphylococcus aureus)
23s rrna (946 kDa, RNA from Staphylococcus aureus)
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
5s rrna (36 kDa, RNA from Staphylococcus aureus)

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EMD-21887

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Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Release date: June 3, 2020
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6wrs
Q-score: 0.561

Wright A, Deane-Alder K, Marschall E, Bamert R, Venugopal H, Lithgow T, Lupton DW, Belousoff MJ

Acs Pharmacol Transl Sci (2020) 3 pp. 425-432 [ Pubmed: 32566908 DOI: doi:10.1021/acsptsci.0c00041 ]

Sample:

50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
Ul22 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
Tedizolid (370 Da, Ligand)
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal subunit (Complex from Staphylococcus aureus)
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus)
5s rrna (36 kDa, RNA from Staphylococcus aureus)
50s ribosomal protein l27 (9 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
23s rrna (946 kDa, RNA from Staphylococcus aureus)
50s ribosomal protein l34 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
Ul25 (12 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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