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sample_name:"40S ribosomal protein S17" AND release_date:[2023-01-01T00:00:00Z TO 2023-12-31T23:59:59Z] AND author_name:"Mielke T" AND author_orcid:"0000-0003-2131-671x"
Cryo-EM structure of the plant 80S ribosome
Release date: Aug. 23, 2023
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8b2l
Q-score: 0.639
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8b2l
Q-score: 0.639
Smirnova J, Loerke J, Kleinau G, Schmidt A, Burger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke R
Nat Plants (2023) 9 pp. 987-1000 [ Pubmed: 37156858 DOI: doi:10.1038/s41477-023-01407-y ]
Sample:
- El36 (60s ribosomal protein l36) (12 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s15a-1 (14 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l38 (8 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s27 (9 kDa, Protein from Nicotiana tabacum)
- Ul5 (60s ribosomal protein l11) (20 kDa, Protein from Nicotiana tabacum)
- Ul2 (60s ribosomal protein l8) (28 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l29 (7 kDa, Protein from Nicotiana tabacum)
- Ul4 (60s ribosomal protein l4) (44 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s25 (11 kDa, Protein from Nicotiana tabacum)
- Ubiquitin-40s ribosomal protein s27a-like (17 kDa, Protein from Nicotiana tabacum)
- El33 (60s ribosomal protein l35a) (12 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l37a (10 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l21-1-like (18 kDa, Protein from Nicotiana tabacum)
- Spermine (202 Da, Ligand)
- 40s ribosomal protein s8 (25 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l13 (23 kDa, Protein from Nicotiana tabacum)
- Guanine nucleotide-binding protein subunit beta-like protein (36 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s20-2 (13 kDa, Protein from Nicotiana tabacum)
- Nascent chain (2 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l22-2-like (14 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l18-2-like (20 kDa, Protein from Nicotiana tabacum)
- Ribosomal protein l19 (25 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s9-2-like (23 kDa, Protein from Nicotiana tabacum)
- Trna (24 kDa, RNA from Nicotiana tabacum)
- 18s rrna (583 kDa, RNA from Nicotiana tabacum)
- 60s ribosomal protein l24-like (18 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l7a (29 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l14-1 (15 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l7-4-like (28 kDa, Protein from Nicotiana tabacum)
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s3a (29 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s4 (29 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l23a (17 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l30-like (12 kDa, Protein from Nicotiana tabacum)
- 40s subunit of the cytosolic 80s ribosome from tobacco (Complex from Nicotiana tabacum)
- 40s ribosomal protein s5-like (23 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s14-2 (16 kDa, Protein from Nicotiana tabacum)
- Ribosomal protein l15 (24 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s10-1-like (23 kDa, Protein from Nicotiana tabacum)
- El28 (60s ribosomal protein l28) (15 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l39-3 (6 kDa, Protein from Nicotiana tabacum)
- Potassium ion (39 Da, Ligand)
- 25s rrna (1 MDa, RNA from Nicotiana tabacum)
- 40s ribosomal protein s29 (6 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s28 (7 kDa, Protein from Nicotiana tabacum)
- 30s ribosomal protein s15, chloroplastic (17 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l23 (15 kDa, Protein from Nicotiana tabacum)
- El6 (60s ribosomal protein l6) (25 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s12 (15 kDa, Protein from Nicotiana tabacum)
- El27 (60s ribosomal protein l27) (15 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s26 (14 kDa, Protein from Nicotiana tabacum)
- Ul16 (60s ribosomal protein l10) (25 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s6 (28 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein sa (35 kDa, Protein from Nicotiana tabacum)
- El31 (60s ribosomal protein l31) (13 kDa, Protein from Nicotiana tabacum)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Nicotiana tabacum)
- Ul13 (60s ribosomal protein l13a) (23 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s17-like (16 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l44 (12 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s15-like (17 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l32-1 (15 kDa, Protein from Nicotiana tabacum)
- 50s ribosomal protein l22, chloroplastic (20 kDa, Protein from Nicotiana tabacum)
- Ul15 (60s ribosomal protein l27a) (16 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s3-2-like (27 kDa, Protein from Nicotiana tabacum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s30 (6 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s24 (15 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l34 (13 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l35-like (14 kDa, Protein from Nicotiana tabacum)
- Water (18 Da, Ligand)
- Ul3 (60s ribosomal protein l3) (44 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l41 (3 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l5-like (34 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s19-3 (16 kDa, Protein from Nicotiana tabacum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s18 (17 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s23 (15 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s16 (16 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s2-3-like (30 kDa, Protein from Nicotiana tabacum)
- Ribosomal protein l37 (10 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s11-like (17 kDa, Protein from Nicotiana tabacum)
- Ul6 (60s ribosomal protein l9) (22 kDa, Protein from Nicotiana tabacum)
- 40s ribosomal protein s7 (22 kDa, Protein from Nicotiana tabacum)
- 60s ribosomal protein l18a (21 kDa, Protein from Nicotiana tabacum)
- Mrna (3 kDa, RNA from Nicotiana tabacum)
- 5.8s rrna (52 kDa, RNA from Nicotiana tabacum)
- Ul24 (60s ribosomal protein l26) (16 kDa, Protein from Nicotiana tabacum)
- 5s rrna (38 kDa, RNA from Nicotiana tabacum)
Cryo-EM structure of the plant 40S subunit
Release date: June 7, 2023
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8auv
Q-score: 0.622
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8auv
Q-score: 0.622
Smirnova J, Loerke J, Kleinau G, Schmidt A, Burger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke R
Nat Plants (2023) 9 pp. 987-1000 [ Pubmed: 37156858 DOI: doi:10.1038/s41477-023-01407-y ]
Sample:
- Es24 (40s ribosomal protein s24) (15 kDa, Protein from Nicotiana tabacum)
- Es27 (40s ribosomal protein s27) (9 kDa, Protein from Nicotiana tabacum)
- Potassium ion (39 Da, Ligand)
- Us3 (40s ribosomal protein s3) (27 kDa, Protein from Nicotiana tabacum)
- Us4 (40s ribosomal protein s9) (23 kDa, Protein from Nicotiana tabacum)
- Es31 (ubiquitin-40s ribosomal protein s27a) (17 kDa, Protein from Nicotiana tabacum)
- Es19 (40s ribosomal protein s19) (16 kDa, Protein from Nicotiana tabacum)
- Es7 (40s ribosomal protein s7) (22 kDa, Protein from Nicotiana tabacum)
- Us10 (40s ribosomal protein s20) (13 kDa, Protein from Nicotiana tabacum)
- Magnesium ion (24 Da, Ligand)
- Spermidine (145 Da, Ligand)
- Es6 (40s ribosomal protein s6) (28 kDa, Protein from Nicotiana tabacum)
- Us19 (40s ribosomal protein s15) (17 kDa, Protein from Nicotiana tabacum)
- Us8 (40s ribosomal protein s15a) (14 kDa, Protein from Nicotiana tabacum)
- Es30 (40s ribosomal protein s30) (6 kDa, Protein from Nicotiana tabacum)
- Us9 (40s ribosomal protein s16) (16 kDa, Protein from Nicotiana tabacum)
- Es26 (40s ribosomal protein s26) (14 kDa, Protein from Nicotiana tabacum)
- Us15 (40s ribosomal protein s13) (17 kDa, Protein from Nicotiana tabacum)
- Es25 (40s ribosomal protein s25) (11 kDa, Protein from Nicotiana tabacum)
- Us17 (40s ribosomal protein s11) (17 kDa, Protein from Nicotiana tabacum)
- Spermine (202 Da, Ligand)
- Es1 (40s ribosomal protein s3a) (29 kDa, Protein from Nicotiana tabacum)
- Es12 (40s ribosomal protein s12) (15 kDa, Protein from Nicotiana tabacum)
- 40s subunit of the cytosolic 80s ribosome from tobacco (Complex from Nicotiana tabacum)
- Rack1 (guanine nucleotide-binding protein subunit beta-like protein) (36 kDa, Protein from Nicotiana tabacum)
- Us13 (40s ribosomal protein s18) (17 kDa, Protein from Nicotiana tabacum)
- Us12 (40s ribosomal protein s23) (15 kDa, Protein from Nicotiana tabacum)
- Es10 (40s ribosomal protein s10) (23 kDa, Protein from Nicotiana tabacum)
- Mrna (3 kDa, RNA from Nicotiana tabacum)
- Zinc ion (65 Da, Ligand)
- Es8 (40s ribosomal protein s8) (25 kDa, Protein from Nicotiana tabacum)
- Es17 (40s ribosomal protein s17) (16 kDa, Protein from Nicotiana tabacum)
- Us5 (40s ribosomal protein s2) (30 kDa, Protein from Nicotiana tabacum)
- Us2 (40s ribosomal protein sa) (35 kDa, Protein from Nicotiana tabacum)
- Water (18 Da, Ligand)
- Us7 (40s ribosomal protein s5) (23 kDa, Protein from Nicotiana tabacum)
- Us11 (40s ribosomal protein s14) (16 kDa, Protein from Nicotiana tabacum)
- Es4 (40s ribosomal protein s4) (29 kDa, Protein from Nicotiana tabacum)
- Es28 (40s ribosomal protein s28) (7 kDa, Protein from Nicotiana tabacum)
- 18s rrna (583 kDa, RNA from Nicotiana tabacum)
- Es21 (40s ribosomal protein s21) (9 kDa, Protein from Nicotiana tabacum)
- Us14 (40s ribosomal protein s29) (6 kDa, Protein from Nicotiana tabacum)