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sample_name:"CP Phe-tRNA"
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Release date: June 14, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384
Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N
Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]
Sample:
- Zinc ion (65 Da, Ligand)
- Ul16m (28 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Small ribosomal subunit protein ms29 (46 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
- Spermidine (145 Da, Ligand)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Potassium ion (39 Da, Ligand)
- Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- E-site trna (894 Da, RNA from Sus scrofa)
- Cp phe-trna (23 kDa, RNA from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- 55s mammalian mitochondrial ribosome with mtrf1 and p-site trna (2 MDa, Complex from Sus scrofa)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml43 (17 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Mrna (2 kDa, RNA from Homo sapiens)
- Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Ms39 (78 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitoribosomal protein bs6m, mrps6 (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Large ribosomal subunit protein ul22m (24 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- 39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
- Phenylalanine (165 Da, Ligand)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Release date: June 14, 2023
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8oiq
Q-score: 0.44
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8oiq
Q-score: 0.44
Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N
Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]
Sample:
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
- N-formylmethionine (177 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
- Potassium ion (39 Da, Ligand)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Sus scrofa)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- E-site trna (894 Da, RNA from Sus scrofa)
- Cp phe-trna (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ul22m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
- Phenylalanine (165 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
- 39s mammalian mitochondrial ribosome with mtrf1 and p-site trnamet (1 MDa, Complex from Sus scrofa)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)