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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

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Structural biology

Heidelberg

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Hinxton

EMBL-EBI: European Bioinformatics Institute

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Epigenetics and neurobiology

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sample_name:"IRON/SULFUR CLUSTER" AND author_name:"Li M" AND natural_source_ncbi_code:"3702"

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EMD-32462

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Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
Phylloquinone (450 Da, Ligand)
Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
Chlorophyll a (893 Da, Ligand)
Chlorophyll b (907 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)

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EMD-32463

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Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Psi complex in the ndh-psi supercomplex of arabidopsis (Complex from Arabidopsis thaliana)
Phylloquinone (450 Da, Ligand)
Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
Chlorophyll a (893 Da, Ligand)
Chlorophyll b (907 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
Iron/sulfur cluster (351 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)

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EMD-32465

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Subcomplexes A and E in NDH complex from Arabidopsis

Release date: March 16, 2022
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7wfg
Q-score: 0.232

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sample:

Ndht (10 kDa, Protein from Arabidopsis thaliana)
Iron/sulfur cluster (351 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
Ndho (17 kDa, Protein from Arabidopsis thaliana)
Subcomplex a and e in ndh complex from arabidopsis (Complex from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from Arabidopsis thaliana)

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EMD-32477

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Cyclic electron transport supercomplex NDH-PSI from Arabidopsis

Release date: March 16, 2022
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ Pubmed: 35123031 DOI: doi:10.1016/j.molp.2022.01.020 ]

Sample:

Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from thale cress)
Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from thale cress)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from thale cress)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from thale cress)
Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
Beta-carotene (536 Da, Ligand)
Phylloquinone (450 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from thale cress)
Ndho (17 kDa, Protein from thale cress)
Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from thale cress)
Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from thale cress)
Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from thale cress)
Ndht (10 kDa, Protein from thale cress)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from thale cress)
Iron/sulfur cluster (351 Da, Ligand)
Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from thale cress)
Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from thale cress)
Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from thale cress)
Chlorophyll b (907 Da, Ligand)
Ndh dependent flow 6 (18 kDa, Protein from thale cress)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from thale cress)
Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from thale cress)
Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
Chlorophyll a (893 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from thale cress)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from thale cress)

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Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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