Complete DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8g9o
Q-score: 0.275
Mullins EA, Salay LE, Durie CL, Bradley NP, Jackman JE, Ohi MD, Chazin WJ, Eichman BF
Nat Struct Mol Biol (2024) 31 pp. 777-790 [ DOI: doi:10.1038/s41594-024-01227-4 Pubmed: 38491139 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Primase (Complex from Xenopus laevis)
- Dna polymerase alpha catalytic subunit (129 kDa, Protein from Xenopus laevis)
- Dna primase large subunit (59 kDa, Protein from Xenopus laevis)
- Polymerase alpha (Complex from Xenopus laevis)
- Dna template (15 kDa, DNA from synthetic construct)
- Rna-dna primer (6 kDa, Macromolecule from synthetic construct)
- 2'-deoxyguanosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna elongation substrate (20 kDa, Complex from synthetic construct)
- Polymerase alpha-primase with a dna elongation substrate (110 kDa, Complex)
Na+ - translocating ferredoxin: NAD+ reductase (Rnf) of C. tetanomorphum
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 7zc6
Q-score: 0.38
Vitt S, Prinz S, Eisinger M, Ermler U, Buckel W
Nat Commun (2022) 13 pp. 6315-6315 [ Pubmed: 36274063 DOI: doi:10.1038/s41467-022-34007-z ]
- Iron/sulfur cluster (351 Da, Ligand)
- Rnfd (32 kDa, Protein from Clostridium tetanomorphum)
- Rnfb (28 kDa, Protein from Clostridium tetanomorphum)
- Rnfc (47 kDa, Protein from Clostridium tetanomorphum)
- Rnfg (19 kDa, Protein from Clostridium tetanomorphum)
- Flavin mononucleotide (456 Da, Ligand)
- Rnfa (20 kDa, Protein from Clostridium tetanomorphum)
- Na+ -translocating ferredoxin: nad+ reductase (rnf) (165 kDa, Complex from Clostridium tetanomorphum)
- Rnfe (21 kDa, Protein from Clostridium tetanomorphum)
- Riboflavin (376 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
Subcomplexes A and E in NDH complex from Arabidopsis
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7wfg
Q-score: 0.232
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Ndht (10 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Ndho (17 kDa, Protein from Arabidopsis thaliana)
- Subcomplex a and e in ndh complex from arabidopsis (Complex from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from Arabidopsis thaliana)