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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"POTASSIUM ION" AND natural_source_ncbi_code:"9823" AND author_name:"Dreos R"

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EMD-16894

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55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Release date: June 14, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384

Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N

Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]

Sample:

Zinc ion (65 Da, Ligand)
Ul16m (28 kDa, Protein from Sus scrofa)
N-formylmethionine (177 Da, Ligand)
Small ribosomal subunit protein ms29 (46 kDa, Protein from Sus scrofa)
39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
12s rrna (308 kDa, RNA from Sus scrofa)
Us9m (45 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
Ml54 (15 kDa, Protein from Sus scrofa)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
Spermidine (145 Da, Ligand)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
Ul24m (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
Mrpl34 (18 kDa, Protein from Sus scrofa)
Ribosomal protein (10 kDa, Protein from Sus scrofa)
Ict1 (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
Small ribosomal subunit protein ms38 (22 kDa, Protein from Sus scrofa)
39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
Potassium ion (39 Da, Ligand)
Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
Guanosine-5'-diphosphate (443 Da, Ligand)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
E-site trna (894 Da, RNA from Sus scrofa)
Cp phe-trna (23 kDa, RNA from Sus scrofa)
Ml64 (25 kDa, Protein from Sus scrofa)
39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
Spermine (202 Da, Ligand)
Ms23 (21 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein ml51 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein bl34m (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
Water (18 Da, Ligand)
55s mammalian mitochondrial ribosome with mtrf1 and p-site trna (2 MDa, Complex from Sus scrofa)
Large ribosomal subunit protein ul30m (18 kDa, Protein from Sus scrofa)
Ml42 (16 kDa, Protein from Sus scrofa)
39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein bl33m (7 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Sus scrofa)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
Ml44 (37 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein ml43 (17 kDa, Protein from Sus scrofa)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
Bl17m (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
Mrna (2 kDa, RNA from Homo sapiens)
Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
Ms39 (78 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
Mitoribosomal protein bs6m, mrps6 (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
Adenosine-5'-triphosphate (507 Da, Ligand)
Large ribosomal subunit protein ul22m (24 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
16s rrna (504 kDa, RNA from Sus scrofa)
39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
Phenylalanine (165 Da, Ligand)
Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)

[Show more]

EMD-16896

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39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Release date: June 14, 2023
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8oiq
Q-score: 0.44

Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N

Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]

Sample:

39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
Ict1 (43 kDa, Protein from Sus scrofa)
Zinc ion (65 Da, Ligand)
Large ribosomal subunit protein ul30m (18 kDa, Protein from Sus scrofa)
Ml42 (16 kDa, Protein from Sus scrofa)
39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
Bl17m (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
Ul16m (28 kDa, Protein from Sus scrofa)
P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
N-formylmethionine (177 Da, Ligand)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein bl33m (7 kDa, Protein from Sus scrofa)
39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
Potassium ion (39 Da, Ligand)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
Ml54 (15 kDa, Protein from Sus scrofa)
39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Sus scrofa)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
E-site trna (894 Da, RNA from Sus scrofa)
Cp phe-trna (23 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein ul22m (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
Ml64 (25 kDa, Protein from Sus scrofa)
39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
Ml44 (37 kDa, Protein from Sus scrofa)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
16s rrna (504 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
Phenylalanine (165 Da, Ligand)
39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
Ul24m (24 kDa, Protein from Sus scrofa)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein ml43 (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
39s mammalian mitochondrial ribosome with mtrf1 and p-site trnamet (1 MDa, Complex from Sus scrofa)
Large ribosomal subunit protein bl34m (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Sus scrofa)
Large ribosomal subunit protein ml51 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
Ribosomal protein (10 kDa, Protein from Sus scrofa)

[Show more]

EMD-16895

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28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Release date: May 24, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oip
Q-score: 0.418

Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N

Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]

Sample:

Potassium ion (39 Da, Ligand)
Ms23 (21 kDa, Protein from Sus scrofa)
12s rrna (309 kDa, RNA from Sus scrofa)
Bl31m (15 kDa, Protein from Sus scrofa)
28s mammalian mitochondrial small ribosomal subunit with mtrf1, mrna, and p-site trna (1 MDa, Complex from Sus scrofa)
Bs6m,mitochondrial ribosomal protein s6 (41 kDa, Protein from Sus scrofa)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
Us17m (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
Adenosine-5'-triphosphate (507 Da, Ligand)
P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
Death associated protein 3 (46 kDa, Protein from Sus scrofa)
28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
Spermidine (145 Da, Ligand)
Us9m (45 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
Ms39 (78 kDa, Protein from Sus scrofa)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
Guanosine-5'-diphosphate (443 Da, Ligand)
Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
Spermine (202 Da, Ligand)
Fe-s-o hybrid cluster (335 Da, Ligand)
Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
Water (18 Da, Ligand)
Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
Mrna (2 kDa, RNA from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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Field: