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1G5 : Summary
Code ![](/pdbe/static/images/help.png)
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1G5
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One-letter code ![](/pdbe/static/images/help.png)
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X
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Molecule name ![](/pdbe/static/images/help.png)
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HMB-Val-Ser-Phe(4-NH2CH2)-methyl vinyl sulfone, bound form
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Systematic names ![](/pdbe/static/images/help.png)
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Formula ![](/pdbe/static/images/help.png)
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C28 H40 N4 O7 S
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Formal charge ![](/pdbe/static/images/help.png)
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0
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Molecular weight ![](/pdbe/static/images/help.png)
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576.705 Da
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SMILES ![](/pdbe/static/images/help.png)
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Type | Program | Version | Descriptor |
SMILES
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ACDLabs |
12.01 |
O=S(=O)(C)CCC(NC(=O)C(NC(=O)C(NC(=O)c1cccc(O)c1C)C(C)C)CO)Cc2ccc(cc2)CN |
SMILES
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CACTVS |
3.370 |
CC(C)[CH](NC(=O)c1cccc(O)c1C)C(=O)N[CH](CO)C(=O)N[CH](CC[S](C)(=O)=O)Cc2ccc(CN)cc2 |
SMILES
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OpenEye OEToolkits |
1.7.6 |
Cc1c(cccc1O)C(=O)NC(C(C)C)C(=O)NC(CO)C(=O)NC(CCS(=O)(=O)C)Cc2ccc(cc2)CN |
Canonical SMILES
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CACTVS |
3.370 |
CC(C)[C@H](NC(=O)c1cccc(O)c1C)C(=O)N[C@@H](CO)C(=O)N[C@H](CC[S](C)(=O)=O)Cc2ccc(CN)cc2 |
Canonical SMILES
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OpenEye OEToolkits |
1.7.6 |
Cc1c(cccc1O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CO)C(=O)N[C@H](CCS(=O)(=O)C)Cc2ccc(cc2)CN |
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IUPAC InChI ![](/pdbe/static/images/help.png) | InChI=1S/C28H40N4O7S/c1-17(2)25(32-26(35)22-6-5-7-24(34)18(22)3)28(37)31-23(16-33)27(36)30-21(12-13-40(4,38)39)14-19-8-10-20(15-29)11-9-19/h5-11,17,21,23,25,33-34H,12-16,29H2,1-4H3,(H,30,36)(H,31,37)(H,32,35)/t21-,23+,25+/m1/s1 |
IUPAC InChI key ![](/pdbe/static/images/help.png) | OCEOTFNCOHQGQA-VTZPFEBOSA-N |
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wwPDB Information |
Atom count ![](/pdbe/static/images/help.png)
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80 (40 without Hydrogen)
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Polymer type ![](/pdbe/static/images/help.png)
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Amino Acid
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Type description ![](/pdbe/static/images/help.png)
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peptide-like
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Type code ![](/pdbe/static/images/help.png)
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ATOMP
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Is modified ![](/pdbe/static/images/help.png)
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No
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Standard parent ![](/pdbe/static/images/help.png)
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Not Assigned
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Defined at ![](/pdbe/static/images/help.png)
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2013-01-22
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Last modified at ![](/pdbe/static/images/help.png)
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2013-01-25
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Status ![](/pdbe/static/images/help.png)
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Released
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Obsoleted ![](/pdbe/static/images/help.png)
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Not Assigned
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1G5 : Atoms of Molecule
Total Number of Atoms: 80
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C1 |
C |
C1 |
N |
Y |
N |
0 |
8.665 |
1.297 |
-1.101 |
2 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
7.441 |
1.843 |
-1.439 |
3 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
6.272 |
1.239 |
-1.023 |
4 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
6.324 |
0.072 |
-0.258 |
5 |
C3 |
C |
C3 |
N |
Y |
N |
0 |
7.561 |
-0.478 |
0.083 |
6 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
8.727 |
0.137 |
-0.34 |
7 |
C7 |
C |
C7 |
N |
N |
N |
0 |
7.626 |
-1.737 |
0.908 |
8 |
C9 |
C |
C9 |
N |
N |
N |
0 |
5.074 |
-0.577 |
0.19 |
9 |
O8 |
O |
O8 |
N |
N |
N |
0 |
9.933 |
-0.398 |
-0.014 |
10 |
O32 |
O |
O32 |
N |
N |
N |
0 |
5.117 |
-1.651 |
0.758 |
11 |
N10 |
N |
N10 |
N |
N |
N |
0 |
3.887 |
0.021 |
-0.031 |
12 |
C11 |
C |
C11 |
S |
N |
N |
0 |
2.648 |
-0.623 |
0.414 |
13 |
C15 |
C |
C15 |
N |
N |
N |
0 |
1.499 |
-0.138 |
-0.432 |
14 |
O16 |
O |
O16 |
N |
N |
N |
0 |
1.695 |
0.666 |
-1.318 |
15 |
N17 |
N |
N17 |
N |
N |
N |
0 |
0.253 |
-0.598 |
-0.203 |
16 |
C12 |
C |
C12 |
N |
N |
N |
0 |
2.387 |
-0.27 |
1.879 |
17 |
C13 |
C |
C13 |
N |
N |
N |
0 |
3.554 |
-0.763 |
2.738 |
18 |
C14 |
C |
C14 |
N |
N |
N |
0 |
2.253 |
1.247 |
2.023 |
19 |
C18 |
C |
C18 |
S |
N |
N |
0 |
-0.864 |
-0.126 |
-1.025 |
20 |
C19 |
C |
C19 |
N |
N |
N |
0 |
-2.15 |
-0.262 |
-0.251 |
21 |
O33 |
O |
O33 |
N |
N |
N |
0 |
-2.135 |
-0.709 |
0.877 |
22 |
C40 |
C |
C40 |
N |
N |
N |
0 |
-0.947 |
-0.965 |
-2.302 |
23 |
O41 |
O |
O41 |
N |
N |
N |
0 |
-1.27 |
-2.316 |
-1.965 |
24 |
O38 |
O |
O38 |
N |
N |
N |
0 |
-4.803 |
-4.444 |
-1.155 |
25 |
S36 |
S |
S36 |
N |
N |
N |
0 |
-4.794 |
-4.118 |
0.228 |
26 |
O37 |
O |
O37 |
N |
N |
N |
0 |
-5.998 |
-4.229 |
0.974 |
27 |
C39 |
C |
C39 |
N |
N |
N |
0 |
-3.514 |
-5.109 |
1.046 |
28 |
C35 |
C |
C35 |
N |
N |
N |
0 |
-4.146 |
-2.435 |
0.422 |
29 |
C23 |
C |
C23 |
N |
N |
N |
0 |
-5.113 |
-1.439 |
-0.222 |
30 |
C21 |
C |
C21 |
S |
N |
N |
0 |
-4.567 |
-0.019 |
-0.058 |
31 |
C22 |
C |
C22 |
N |
N |
N |
0 |
-5.591 |
0.985 |
-0.59 |
32 |
C24 |
C |
C24 |
N |
Y |
N |
0 |
-5.108 |
2.387 |
-0.318 |
33 |
C25 |
C |
C25 |
N |
Y |
N |
0 |
-5.442 |
3.015 |
0.867 |
34 |
C26 |
C |
C26 |
N |
Y |
N |
0 |
-4.999 |
4.301 |
1.117 |
35 |
C27 |
C |
C27 |
N |
Y |
N |
0 |
-4.221 |
4.957 |
0.182 |
36 |
C30 |
C |
C30 |
N |
N |
N |
0 |
-3.738 |
6.359 |
0.454 |
37 |
N31 |
N |
N31 |
N |
N |
N |
0 |
-2.438 |
6.304 |
1.135 |
38 |
C28 |
C |
C28 |
N |
Y |
N |
0 |
-3.886 |
4.328 |
-1.003 |
39 |
C29 |
C |
C29 |
N |
Y |
N |
0 |
-4.325 |
3.041 |
-1.251 |
40 |
N20 |
N |
N20 |
N |
N |
N |
0 |
-3.317 |
0.113 |
-0.811 |
41 |
H5 |
H |
H5 |
N |
N |
N |
0 |
9.576 |
1.772 |
-1.433 |
42 |
H6 |
H |
H6 |
N |
N |
N |
0 |
7.399 |
2.745 |
-2.031 |
43 |
H7 |
H |
H7 |
N |
N |
N |
0 |
5.318 |
1.668 |
-1.289 |
44 |
H1 |
H |
H1 |
N |
N |
N |
0 |
7.51 |
-2.604 |
0.258 |
45 |
H2 |
H |
H2 |
N |
N |
N |
0 |
8.589 |
-1.789 |
1.415 |
46 |
H3 |
H |
H3 |
N |
N |
N |
0 |
6.826 |
-1.728 |
1.648 |
47 |
H4 |
H |
H4 |
N |
N |
N |
0 |
10.298 |
-0.068 |
0.818 |
48 |
H8 |
H |
H8 |
N |
N |
N |
0 |
3.853 |
0.878 |
-0.484 |
49 |
H9 |
H |
H9 |
N |
N |
N |
0 |
2.744 |
-1.704 |
0.311 |
50 |
H10 |
H |
H10 |
N |
N |
N |
0 |
1.466 |
-0.749 |
2.21 |
51 |
H11 |
H |
H11 |
N |
N |
N |
0 |
3.368 |
-0.512 |
3.782 |
52 |
H12 |
H |
H12 |
N |
N |
N |
0 |
3.65 |
-1.844 |
2.635 |
53 |
H13 |
H |
H13 |
N |
N |
N |
0 |
4.476 |
-0.284 |
2.407 |
54 |
H17 |
H |
H17 |
N |
N |
N |
0 |
0.096 |
-1.241 |
0.506 |
55 |
H14 |
H |
H14 |
N |
N |
N |
0 |
1.422 |
1.598 |
1.411 |
56 |
H15 |
H |
H15 |
N |
N |
N |
0 |
2.067 |
1.498 |
3.067 |
57 |
H16 |
H |
H16 |
N |
N |
N |
0 |
3.175 |
1.726 |
1.692 |
58 |
H18 |
H |
H18 |
N |
N |
N |
0 |
-0.707 |
0.92 |
-1.287 |
59 |
H19 |
H |
H19 |
N |
N |
N |
0 |
-1.721 |
-0.559 |
-2.954 |
60 |
H20 |
H |
H20 |
N |
N |
N |
0 |
0.013 |
-0.938 |
-2.818 |
61 |
H21 |
H |
H21 |
N |
N |
N |
0 |
-1.339 |
-2.906 |
-2.728 |
62 |
H28 |
H |
H28 |
N |
N |
N |
0 |
-2.559 |
-4.957 |
0.542 |
63 |
H29 |
H |
H29 |
N |
N |
N |
0 |
-3.427 |
-4.801 |
2.089 |
64 |
H30 |
H |
H30 |
N |
N |
N |
0 |
-3.785 |
-6.163 |
1.0 |
65 |
H26 |
H |
H26 |
N |
N |
N |
0 |
-4.041 |
-2.206 |
1.482 |
66 |
H27 |
H |
H27 |
N |
N |
N |
0 |
-3.173 |
-2.362 |
-0.064 |
67 |
H24 |
H |
H24 |
N |
N |
N |
0 |
-5.218 |
-1.668 |
-1.282 |
68 |
H25 |
H |
H25 |
N |
N |
N |
0 |
-6.086 |
-1.512 |
0.264 |
69 |
H31 |
H |
H31 |
N |
N |
N |
0 |
-5.714 |
0.845 |
-1.664 |
70 |
H23 |
H |
H23 |
N |
N |
N |
0 |
-4.378 |
0.178 |
0.997 |
71 |
H32 |
H |
H32 |
N |
N |
N |
0 |
-6.547 |
0.828 |
-0.091 |
72 |
H33 |
H |
H33 |
N |
N |
N |
0 |
-6.05 |
2.502 |
1.598 |
73 |
H34 |
H |
H34 |
N |
N |
N |
0 |
-5.261 |
4.792 |
2.042 |
74 |
H38 |
H |
H38 |
N |
N |
N |
0 |
-2.495 |
5.756 |
1.981 |
75 |
H35 |
H |
H35 |
N |
N |
N |
0 |
-3.632 |
6.896 |
-0.489 |
76 |
H36 |
H |
H36 |
N |
N |
N |
0 |
-4.459 |
6.875 |
1.087 |
77 |
H37 |
H |
H37 |
N |
N |
N |
0 |
-2.092 |
7.232 |
1.329 |
78 |
H40 |
H |
H40 |
N |
N |
N |
0 |
-3.277 |
4.841 |
-1.733 |
79 |
H41 |
H |
H41 |
N |
N |
N |
0 |
-4.06 |
2.549 |
-2.174 |
80 |
H22 |
H |
H22 |
N |
N |
N |
0 |
-3.329 |
0.47 |
-1.713 |
1G5 : Chemical Bonds
Total Number of Bonds: 81
1G5 : Used in PDB Entries
Total Number of PDB Entries: 1
Ligand Code |
PDB Entry ID |
Type |
Total |
Distinct |
1G5 |
4int ![Open in New Window](/pdbe-srv/pdbechem/images/newwin.png?_debugResources=y&n=1721050219138) |
Bound ligand
|
4 |
1 |
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