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THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM

X-ray diffraction
1.9Å resolution
PDB entry 1ocm coloured by chain, front view.
PDB entry 1ocm coloured by chain, side view.
PDB entry 1ocm coloured by chain, top view.
Source organism: Bradyrhizobium japonicum
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Amidase domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 27288.88 Å2
Buried surface area: 3599.83 Å2
Dissociation area: 1,465.73 Å2
Dissociation energy (ΔGdiss): -0.09 kcal/mol
Dissociation entropy (TΔSdiss): 14.16 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-195661

Macromolecules

Amidase domain-containing protein
Chains: A, B
Length: 412 amino acids
Theoretical weight: 43.59 KDa
Source organism: Bradyrhizobium japonicum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9ZIV5 (Residues: 1-412; Coverage: 100%)
Pfam: Amidase
InterPro:
CATH: Amidase signature (AS) domain
SCOP: Amidase signature (AS) enzymes
Amidase domain-containing protein in PDB entry 1ocm, assembly 1, front view.
Amidase domain-containing protein in PDB entry 1ocm, assembly 1, side view.
Amidase domain-containing protein in PDB entry 1ocm, assembly 1, top view.
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