Articles - 1q9w mentioned but not cited (3)
- Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility. Babor M, Kortemme T. Proteins 75 846-858 (2009)
- Analysis of cross-reactive and specific anti-carbohydrate antibodies against lipopolysaccharide from Chlamydophila psittaci. Gerstenbruch S, Brooks CL, Kosma P, Brade L, Mackenzie CR, Evans SV, Brade H, Müller-Loennies S. Glycobiology 20 461-472 (2010)
- A complete, multi-level conformational clustering of antibody complementarity-determining regions. Nikoloudis D, Pitts JE, Saldanha JW. PeerJ 2 e456 (2014)
Reviews citing this publication (5)
- Antibody recognition of carbohydrate epitopes†. Haji-Ghassemi O, Blackler RJ, Martin Young N, Evans SV. Glycobiology 25 920-952 (2015)
- Glycan array: a powerful tool for glycomics studies. Liang CH, Wu CY. Expert Rev Proteomics 6 631-645 (2009)
- Breaking the law: unconventional strategies for antibody diversification. Kanyavuz A, Marey-Jarossay A, Lacroix-Desmazes S, Dimitrov JD. Nat Rev Immunol 19 355-368 (2019)
- The ABCs (Antibody, B cells, and Carbohydrate epitopes) of cholera immunity: considerations for an improved vaccine. Provenzano D, Kovác P, Wade WF. Microbiol Immunol 50 899-927 (2006)
- The History of Carbohydrates in Type I Allergy. Hils M, Wölbing F, Hilger C, Fischer J, Hoffard N, Biedermann T. Front Immunol 11 586924 (2020)
Articles citing this publication (68)
- A new clustering of antibody CDR loop conformations. North B, Lehmann A, Dunbrack RL. J Mol Biol 406 228-256 (2011)
- Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120. Huang CC, Venturi M, Majeed S, Moore MJ, Phogat S, Zhang MY, Dimitrov DS, Hendrickson WA, Robinson J, Sodroski J, Wyatt R, Choe H, Farzan M, Kwong PD. Proc Natl Acad Sci U S A 101 2706-2711 (2004)
- Structural classification of CDR-H3 revisited: a lesson in antibody modeling. Kuroda D, Shirai H, Kobori M, Nakamura H. Proteins 73 608-620 (2008)
- Differential epitope positioning within the germline antibody paratope enhances promiscuity in the primary immune response. Sethi DK, Agarwal A, Manivel V, Rao KV, Salunke DM. Immunity 24 429-438 (2006)
- Antibodies use heme as a cofactor to extend their pathogen elimination activity and to acquire new effector functions. Dimitrov JD, Roumenina LT, Doltchinkova VR, Mihaylova NM, Lacroix-Desmazes S, Kaveri SV, Vassilev TL. J Biol Chem 282 26696-26706 (2007)
- Protective and nonprotective human immunoglobulin M monoclonal antibodies to Cryptococcus neoformans glucuronoxylomannan manifest different specificities and gene use profiles. Maitta RW, Datta K, Chang Q, Luo RX, Witover B, Subramaniam K, Pirofski LA. Infect Immun 72 4810-4818 (2004)
- A semisynthetic Streptococcus pneumoniae serotype 8 glycoconjugate vaccine. Schumann B, Hahm HS, Parameswarappa SG, Reppe K, Wahlbrink A, Govindan S, Kaplonek P, Pirofski LA, Witzenrath M, Anish C, Pereira CL, Seeberger PH. Sci Transl Med 9 eaaf5347 (2017)
- Elucidation of some Bax conformational changes through crystallization of an antibody-peptide complex. Peyerl FW, Dai S, Murphy GA, Crawford F, White J, Marrack P, Kappler JW. Cell Death Differ 14 447-452 (2007)
- Carbohydrate residues downstream of the terminal Galalpha(1,3)Gal epitope modulate the specificity of xenoreactive antibodies. Milland J, Yuriev E, Xing PX, McKenzie IF, Ramsland PA, Sandrin MS. Immunol Cell Biol 85 623-632 (2007)
- Effects of somatic mutations on CDR loop flexibility during affinity maturation. Wong SE, Sellers BD, Jacobson MP. Proteins 79 821-829 (2011)
- Multivalent display of minimal Clostridium difficile glycan epitopes mimics antigenic properties of larger glycans. Broecker F, Hanske J, Martin CE, Baek JY, Wahlbrink A, Wojcik F, Hartmann L, Rademacher C, Anish C, Seeberger PH. Nat Commun 7 11224 (2016)
- Predicting antibody complementarity determining region structures without classification. Choi Y, Deane CM. Mol Biosyst 7 3327-3334 (2011)
- Solid phase immunoadsorption for therapeutic and analytical studies on neuropathy-associated anti-GM1 antibodies. Townson K, Boffey J, Nicholl D, Veitch J, Bundle D, Zhang P, Samain E, Antoine T, Bernardi A, Arosio D, Sonnino S, Isaacs N, Willison HJ. Glycobiology 17 294-303 (2007)
- Transition towards antigen-binding promiscuity of a monospecific antibody. Dimitrov JD, Lacroix-Desmazes S, Kaveri SV, Vassilev TL. Mol Immunol 44 1854-1863 (2007)
- Exploration of specificity in germline monoclonal antibody recognition of a range of natural and synthetic epitopes. Brooks CL, Müller-Loennies S, Brade L, Kosma P, Hirama T, MacKenzie CR, Brade H, Evans SV. J Mol Biol 377 450-468 (2008)
- Structure of an anti-Lewis X Fab fragment in complex with its Lewis X antigen. van Roon AM, Pannu NS, de Vrind JP, van der Marel GA, van Boom JH, Hokke CH, Deelder AM, Abrahams JP. Structure 12 1227-1236 (2004)
- The anti-non-gal xenoantibody response to xenoantigens on gal knockout pig cells is encoded by a restricted number of germline progenitors. Kiernan K, Harnden I, Gunthart M, Gregory C, Meisner J, Kearns-Jonker M. Am J Transplant 8 1829-1839 (2008)
- In silico analysis of antibody-carbohydrate interactions and its application to xenoreactive antibodies. Agostino M, Sandrin MS, Thompson PE, Yuriev E, Ramsland PA. Mol Immunol 47 233-246 (2009)
- Spatially addressed combinatorial protein libraries for recombinant antibody discovery and optimization. Mao H, Graziano JJ, Chase TM, Bentley CA, Bazirgan OA, Reddy NP, Song BD, Smider VV. Nat Biotechnol 28 1195-1202 (2010)
- Role of antibody paratope conformational flexibility in the manifestation of molecular mimicry. Krishnan L, Sahni G, Kaur KJ, Salunke DM. Biophys J 94 1367-1376 (2008)
- Structural elucidation of the mechanistic basis of degeneracy in the primary humoral response. Khan T, Salunke DM. J Immunol 188 1819-1827 (2012)
- Close-up of the immunogenic α1,3-galactose epitope as defined by a monoclonal chimeric immunoglobulin E and human serum using saturation transfer difference (STD) NMR. Plum M, Michel Y, Wallach K, Raiber T, Blank S, Bantleon FI, Diethers A, Greunke K, Braren I, Hackl T, Meyer B, Spillner E. J Biol Chem 286 43103-43111 (2011)
- Crystal structure of the HIV neutralizing antibody 2G12 in complex with a bacterial oligosaccharide analog of mammalian oligomannose. Stanfield RL, De Castro C, Marzaioli AM, Wilson IA, Pantophlet R. Glycobiology 25 412-419 (2015)
- Ontogeny of recognition specificity and functionality for the broadly neutralizing anti-HIV antibody 4E10. Finton KA, Friend D, Jaffe J, Gewe M, Holmes MA, Larman HB, Stuart A, Larimore K, Greenberg PD, Elledge SJ, Stamatatos L, Strong RK. PLoS Pathog 10 e1004403 (2014)
- Structural basis for antibody targeting of the broadly expressed microbial polysaccharide poly-N-acetylglucosamine. Soliman C, Walduck AK, Yuriev E, Richards JS, Cywes-Bentley C, Pier GB, Ramsland PA. J Biol Chem 293 5079-5089 (2018)
- A Single Human VH-gene Allows for a Broad-Spectrum Antibody Response Targeting Bacterial Lipopolysaccharides in the Blood. Sangesland M, Yousif AS, Ronsard L, Kazer SW, Zhu AL, Gatter GJ, Hayward MR, Barnes RM, Quirindongo-Crespo M, Rohrer D, Lonberg N, Kwon D, Shalek AK, Lingwood D. Cell Rep 32 108065 (2020)
- A monoclonal antibody against a carbohydrate epitope in lipopolysaccharide differentiates Chlamydophila psittaci from Chlamydophila pecorum, Chlamydophila pneumoniae, and Chlamydia trachomatis. Müller-Loennies S, Gronow S, Brade L, MacKenzie R, Kosma P, Brade H. Glycobiology 16 184-196 (2006)
- Structural evaluation of a mimicry-recognizing paratope: plasticity in antigen-antibody interactions manifests in molecular mimicry. Tapryal S, Gaur V, Kaur KJ, Salunke DM. J Immunol 191 456-463 (2013)
- Antibody recognition of cancer-related gangliosides and their mimics investigated using in silico site mapping. Agostino M, Yuriev E, Ramsland PA. PLoS One 7 e35457 (2012)
- Prevalence and gene characteristics of antibodies with cofactor-induced HIV-1 specificity. Lecerf M, Scheel T, Pashov AD, Jarossay A, Ohayon D, Planchais C, Mesnage S, Berek C, Kaveri SV, Lacroix-Desmazes S, Dimitrov JD. J Biol Chem 290 5203-5213 (2015)
- Antigenic potential of a highly conserved Neisseria meningitidis lipopolysaccharide inner core structure defined by chemical synthesis. Reinhardt A, Yang Y, Claus H, Pereira CL, Cox AD, Vogel U, Anish C, Seeberger PH. Chem Biol 22 38-49 (2015)
- Structural investigation of human S. aureus-targeting antibodies that bind wall teichoic acid. Fong R, Kajihara K, Chen M, Hotzel I, Mariathasan S, Hazenbos WLW, Lupardus PJ. MAbs 10 979-991 (2018)
- Synthesis of chlamydia lipopolysaccharide haptens through the use of α-specific 3-iodo-Kdo fluoride glycosyl donors. Pokorny B, Kosma P. Chemistry 21 305-313 (2015)
- Use of molecular modeling and site-directed mutagenesis to define the structural basis for the immune response to carbohydrate xenoantigens. Kearns-Jonker M, Barteneva N, Mencel R, Hussain N, Shulkin I, Xu A, Yew M, Cramer DV. BMC Immunol 8 3 (2007)
- 2G12-expressing B cell lines may aid in HIV carbohydrate vaccine design strategies. Doores KJ, Huber M, Le KM, Wang SK, Doyle-Cooper C, Cooper A, Pantophlet R, Wong CH, Nemazee D, Burton DR. J Virol 87 2234-2241 (2013)
- Antigen recognition by antibody C836 through adjustment of V(L)/V(H) packing. Teplyakov A, Obmolova G, Malia T, Gilliland G. Acta Crystallogr Sect F Struct Biol Cryst Commun 67 1165-1167 (2011)
- Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance. Theillet FX, Frank M, Vulliez-Le Normand B, Simenel C, Hoos S, Chaffotte A, Bélot F, Guerreiro C, Nato F, Phalipon A, Mulard LA, Delepierre M. Glycobiology 21 1570-1579 (2011)
- Structural basis for selective cross-reactivity in a bactericidal antibody against inner core lipooligosaccharide from Neisseria meningitidis. Parker MJ, Gomery K, Richard G, MacKenzie CR, Cox AD, Richards JC, Evans SV. Glycobiology 24 442-449 (2014)
- The tail of KdsC: conformational changes control the activity of a haloacid dehalogenase superfamily phosphatase. Biswas T, Yi L, Aggarwal P, Wu J, Rubin JR, Stuckey JA, Woodard RW, Tsodikov OV. J Biol Chem 284 30594-30603 (2009)
- Characterization of murine monoclonal antibodies against Helicobacter pylori lipopolysaccharide specific for Lex and Ley blood group determinants. Altman E, Harrison BA, Hirama T, Chandan V, To R, MacKenzie R. Biochem Cell Biol 83 589-596 (2005)
- Adjustable locks and flexible keys: plasticity of epitope-paratope interactions in germline antibodies. Khan T, Salunke DM. J Immunol 192 5398-5405 (2014)
- Structural insights into parallel strategies for germline antibody recognition of lipopolysaccharide from Chlamydia. Evans DW, Müller-Loennies S, Brooks CL, Brade L, Kosma P, Brade H, Evans SV. Glycobiology 21 1049-1059 (2011)
- The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen. Brooks CL, Blackler RJ, Sixta G, Kosma P, Müller-Loennies S, Brade L, Hirama T, MacKenzie CR, Brade H, Evans SV. Glycobiology 20 138-147 (2010)
- Therapeutic Antibodies to Ganglioside GD2 Evolved from Highly Selective Germline Antibodies. Sterner E, Peach ML, Nicklaus MC, Gildersleeve JC. Cell Rep 20 1681-1691 (2017)
- Thermodynamic stability contributes to immunoglobulin specificity. Dimitrov JD, Kaveri SV, Lacroix-Desmazes S. Trends Biochem Sci 39 221-226 (2014)
- On the domain pairing in chimeric antibodies. Teplyakov A, Obmolova G, Carton JM, Gao W, Zhao Y, Gilliland GL. Mol Immunol 47 2422-2426 (2010)
- Synthesis of a neoglycoconjugate containing a Chlamydophila psittaci-specific branched Kdo trisaccharide epitope. Kosma P, Hofinger A, Müller-Loennies S, Brade H. Carbohydr Res 345 704-708 (2010)
- Synthesis of an Undecasaccharide Featuring an Oligomannosidic Heptasaccharide and a Bacterial Kdo-lipid A Backbone for Eliciting Neutralizing Antibodies to Mammalian Oligomannose on the HIV-1 Envelope Spike. Trattnig N, Blaukopf M, Bruxelle JF, Pantophlet R, Kosma P. J Am Chem Soc 141 7946-7954 (2019)
- A rAb screening method for improving the probability of identifying peptide mimotopes of carbohydrate antigens. Weisser NE, Almquist KC, Hall JC. Vaccine 25 4611-4622 (2007)
- Groove-type recognition of chlamydiaceae-specific lipopolysaccharide antigen by a family of antibodies possessing an unusual variable heavy chain N-linked glycan. Haji-Ghassemi O, Müller-Loennies S, Saldova R, Muniyappa M, Brade L, Rudd PM, Harvey DJ, Kosma P, Brade H, Evans SV. J Biol Chem 289 16644-16661 (2014)
- Structure of an anti-cholera toxin antibody Fab in complex with an epitope-derived D-peptide: a case of polyspecific recognition. Scheerer P, Kramer A, Otte L, Seifert M, Wessner H, Scholz C, Krauss N, Schneider-Mergener J, Höhne W. J Mol Recognit 20 263-274 (2007)
- A Structural Model for the Ligand Binding of Pneumococcal Serotype 3 Capsular Polysaccharide-Specific Protective Antibodies. Ozdilek A, Huang J, Babb R, Paschall AV, Middleton DR, Duke JA, Pirofski LA, Mousa JJ, Avci FY. mBio 12 e0080021 (2021)
- Kinetics and thermodynamics of interaction of coagulation factor VIII with a pathogenic human antibody. Dimitrov JD, Roumenina LT, Andre S, Repesse Y, Atanasov BP, Jacquemin M, Saint-Remy JM, Bayry J, Kaveri SV, Lacroix-Desmazes S. Mol Immunol 47 290-297 (2009)
- Pneumococcal Polysaccharide Vaccination Elicits IgG Anti-A/B Blood Group Antibodies in Healthy Individuals and Patients with Type I Diabetes Mellitus. Wolfram W, Sauerwein KM, Binder CJ, Eibl-Musil N, Wolf HM, Fischer MB. Front Immunol 7 493 (2016)
- Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. Haji-Ghassemi O, Müller-Loennies S, Rodriguez T, Brade L, Kosma P, Brade H, Evans SV. J Biol Chem 290 19629-19640 (2015)
- Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1. Ahmed F, André-Leroux G, Haouz A, Boutonnier A, Delepierre M, Qadri F, Nato F, Fournier JM, Alzari PM. Proteins 70 284-288 (2008)
- Modifying antibody specificity by chain shuffling of V / V between antibodies with related specificities. Christensen PA, Danielczyk A, Ravn P, Larsen M, Stahn R, Karsten U, Goletz S. Scand J Immunol 69 1-10 (2009)
- Surface Plasmon Resonance Analysis Shows an IgG-Isotype-Specific Defect in ABO Blood Group Antibody Formation in Patients with Common Variable Immunodeficiency. Fischer MB, Wolfram W, Binder CJ, Böhmig GA, Wahrmann M, Eibl MM, Wolf HM. Front Immunol 6 211 (2015)
- Synthesis of α-d-glucosyl substituted methyl glycosides of 3-deoxy-α-d-manno- and d-glycero-α-d-talo-oct-2-ulosonic acid (Kdo/Ko) corresponding to inner core fragments of Acinetobacter lipopolysaccharide. Pokorny B, Müller-Loennies S, Kosma P. Carbohydr Res 391 66-81 (2014)
- A structural insight into the molecular recognition of a (-)-Delta9-tetrahydrocannabinol and the development of a sensitive, one-step, homogeneous immunocomplex-based assay for its detection. Niemi MH, Turunen L, Pulli T, Nevanen TK, Höyhtyä M, Söderlund H, Rouvinen J, Takkinen K. J Mol Biol 400 803-814 (2010)
- Synthesis of spacer-containing chlamydial disaccharides as analogues of the alpha-Kdop-(2-->8)-alpha-Kdop-(2-->4)-alpha-Kdop trisaccharide epitope. Sixta G, Hofinger A, Kosma P. Carbohydr Res 342 576-585 (2007)
- The Combining Sites of Anti-lipid A Antibodies Reveal a Widely Utilized Motif Specific for Negatively Charged Groups. Haji-Ghassemi O, Müller-Loennies S, Rodriguez T, Brade L, Grimmecke HD, Brade H, Evans SV. J Biol Chem 291 10104-10118 (2016)
- Antigen binding by conformational selection in near-germline antibodies. Blackler RJ, Müller-Loennies S, Pokorny-Lehrer B, Legg MSG, Brade L, Brade H, Kosma P, Evans SV. J Biol Chem 298 101901 (2022)
- Selective Recognition of Carbohydrate Antigens by Germline Antibodies Isolated from AID Knockout Mice. DeLaitsch AT, Pridgen JR, Tytla A, Peach ML, Hu R, Farnsworth DW, McMillan AK, Flanagan N, Temme JS, Nicklaus MC, Gildersleeve JC. J Am Chem Soc 144 4925-4941 (2022)
- Structural and functional analyses of antibodies specific for modified core N-glycans suggest a role in TH 2 responses. Plum M, Tjerrild L, Raiber T, Bantleon F, Bantleon S, Miehe M, Jabs F, Seismann H, Möbs C, Pfützner W, Jakob T, Andersen GR, Spillner E. Allergy 78 121-130 (2023)
- Synthesis and antigenic properties of C-7-modified Kdo mono- and disaccharide ligands and Kdo disaccharide interresidue lactones. Sixta G, Wimmer K, Hofinger A, Brade H, Kosma P. Carbohydr Res 344 1660-1669 (2009)
- Evolutionary trajectory of receptor binding specificity and promiscuity of the spike protein of SARS-CoV-2. Planchais C, Reyes-Ruiz A, Lacombe R, Zarantonello A, Lecerf M, Revel M, Roumenina LT, Atanasov BP, Mouquet H, Dimitrov JD. Protein Sci 31 e4447 (2022)
- Polyreactivity of antibodies from different B-cell subpopulations is determined by distinct sequence patterns of variable region. Lecerf M, Lacombe RV, Dimitrov JD. Front Immunol 14 1266668 (2023)