Articles - 2c3z mentioned but not cited (11)
- Mapping the structure of folding cores in TIM barrel proteins by hydrogen exchange mass spectrometry: the roles of motif and sequence for the indole-3-glycerol phosphate synthase from Sulfolobus solfataricus. Gu Z, Zitzewitz JA, Matthews CR. J Mol Biol 368 582-594 (2007)
- Clusters of isoleucine, leucine, and valine side chains define cores of stability in high-energy states of globular proteins: Sequence determinants of structure and stability. Kathuria SV, Chan YH, Nobrega RP, Özen A, Matthews CR. Protein Sci 25 662-675 (2016)
- Structural analysis of kinetic folding intermediates for a TIM barrel protein, indole-3-glycerol phosphate synthase, by hydrogen exchange mass spectrometry and Gō model simulation. Gu Z, Rao MK, Forsyth WR, Finke JM, Matthews CR. J Mol Biol 374 528-546 (2007)
- Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints. Chan YH, Venev SV, Zeldovich KB, Matthews CR. Nat Commun 8 14614 (2017)
- RheoScale: A tool to aggregate and quantify experimentally determined substitution outcomes for multiple variants at individual protein positions. Hodges AM, Fenton AW, Dougherty LL, Overholt AC, Swint-Kruse L. Hum Mutat 39 1814-1826 (2018)
- Betaalpha-hairpin clamps brace betaalphabeta modules and can make substantive contributions to the stability of TIM barrel proteins. Yang X, Kathuria SV, Vadrevu R, Matthews CR. PLoS One 4 e7179 (2009)
- Frustration and folding of a TIM barrel protein. Halloran KT, Wang Y, Arora K, Chakravarthy S, Irving TC, Bilsel O, Brooks CL, Matthews CR. Proc Natl Acad Sci U S A 116 16378-16383 (2019)
- A conserved folding nucleus sculpts the free energy landscape of bacterial and archaeal orthologs from a divergent TIM barrel family. Jain R, Muneeruddin K, Anderson J, Harms MJ, Shaffer SA, Matthews CR. Proc Natl Acad Sci U S A 118 e2019571118 (2021)
- An allosteric pathway explains beneficial fitness in yeast for long-range mutations in an essential TIM barrel enzyme. Chan YH, Zeldovich KB, Matthews CR. Protein Sci 29 1911-1923 (2020)
- Protein dynamics governed by interfaces of high polarity and low packing density. Angarica VE, Sancho J. PLoS One 7 e48212 (2012)
- Functional classification of protein structures by local structure matching in graph representation. Mills CL, Garg R, Lee JS, Tian L, Suciu A, Cooperman GD, Beuning PJ, Ondrechen MJ. Protein Sci 27 1125-1135 (2018)
Articles citing this publication (7)
- A novel genetic system for recombinant protein secretion in the Antarctic Pseudoalteromonas haloplanktis TAC125. Cusano AM, Parrilli E, Marino G, Tutino ML. Microb Cell Fact 5 40 (2006)
- CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure. Janda JO, Busch M, Kück F, Porfenenko M, Merkl R. BMC Bioinformatics 13 55 (2012)
- Loop-loop interactions govern multiple steps in indole-3-glycerol phosphate synthase catalysis. Zaccardi MJ, O'Rourke KF, Yezdimer EM, Loggia LJ, Woldt S, Boehr DD. Protein Sci 23 302-311 (2014)
- H2rs: deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments. Janda JO, Popal A, Bauer J, Busch M, Klocke M, Spitzer W, Keller J, Merkl R. BMC Bioinformatics 15 118 (2014)
- Functional identification of the general acid and base in the dehydration step of indole-3-glycerol phosphate synthase catalysis. Zaccardi MJ, Yezdimer EM, Boehr DD. J Biol Chem 288 26350-26356 (2013)
- Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa: Decarboxylation is not essential for indole formation. Söderholm A, Newton MS, Patrick WM, Selmer M. J Biol Chem 295 15948-15956 (2020)
- Prediction of chaperonin GroE substrates using small structural patterns of proteins. Minami S, Niwa T, Uemura E, Koike R, Taguchi H, Ota M. FEBS Open Bio 13 779-794 (2023)