Protein Data Bank in Europe

Chains: A, I
Length: 880 amino acids
Theoretical weight: 99.82 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980R2 (Residues: 1-880; Coverage: 100%)

Gene names: SSO0225, rpo1N, rpoA1
Pfam:

• RNA polymerase Rpb1, domain 1
• RNA polymerase Rpb1, domain 2
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5

InterPro:

• RNA polymerase Rpb1, clamp domain superfamily
• RNA polymerase Rpb1, domain 1
• DNA-directed RNA polymerase subunit Rpo1N
• DNA-directed RNA polymerase, subunit beta-prime
• RNA polymerase, N-terminal
• RNA polymerase, alpha subunit
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, funnel domain superfamily
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5

CATH:

• Barwin-like endoglucanases
• RNA polymerase ii
• Arc Repressor Mutant, subunit A
• Dihydrolipoamide Transferase
• Immunoglobulin-like
• Topoisomerase I; Chain A, domain 4
• Single alpha-helices involved in coiled-coils or other helix-helix interfaces
• N-terminal domain of TfIIb

Chains: C, M
Length: 395 amino acids
Theoretical weight: 43.87 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: P58192 (Residues: 1-392; Coverage: 100%)

Gene names: SSO0223, rpo1C, rpoA2
Pfam: RNA polymerase Rpb1, domain 5
InterPro:

• DNA-directed RNA polymerase, subunit beta-prime
• RNA polymerase Rpb1, domain 5
• DNA-directed RNA polymerase subunit Rpo1C

CATH: DNA polymerase; domain 1

Chains: B, J
Length: 1124 amino acids
Theoretical weight: 126.72 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980R1 (Residues: 1-1124; Coverage: 100%)

Gene names: SSO0227/SSO3254, rpo2, rpoB1, rpoB2
Pfam:

• RNA polymerase beta subunit
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• RNA polymerase Rpb2, domain 5
• RNA polymerase Rpb2, domain 6
• RNA polymerase Rpb2, domain 7

InterPro:

• DNA-directed RNA polymerase, subunit 2
• RNA polymerase, beta subunit, protrusion
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 2 superfamily
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• DNA-directed RNA polymerase subunit Rpo2
• RNA polymerase Rpb2, domain 5
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
• RNA polymerase Rpb2, OB-fold
• RNA polymerase, beta subunit, conserved site
• RNA polymerase Rpb2, domain 7

CATH:

• RNA polymerase Rpb2, domain 2
• Hypothetical Protein Ta0175; Chain: A, domain 2
• DNA-directed RNA polymerase, subunit 2, domain 6
• OB fold (Dihydrolipoamide Acetyltransferase, E2P)
• RNA polymerase alpha subunit dimerisation domain

Chains: D, O
Length: 265 amino acids
Theoretical weight: 30.33 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: P95989 (Residues: 1-265; Coverage: 100%)

Gene names: C04_051, SSO0071, rpo3, rpoD
Pfam:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/RpoA insert domain

InterPro:

• DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1
• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase, RpoA/D/Rpb3-type
• DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
• DNA-directed RNA polymerase, insert domain superfamily
• DNA-directed RNA polymerase, insert domain

CATH:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase, insert domain
• Alpha-Beta Plaits

Chains: E, Q
Length: 180 amino acids
Theoretical weight: 20.35 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980A3 (Residues: 1-180; Coverage: 100%)

Gene names: SSO0415, rpo7, rpoE
Pfam:

• SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
• S1 RNA binding domain

InterPro:

• DNA-directed RNA polymerase, subunit E/RPC8
• RNA polymerase Rpb7-like, N-terminal domain superfamily
• RNA polymerase subunit Rpb7-like
• DNA-directed RNA polymerase subunit Rpo7
• RNA polymerase Rpb7-like , N-terminal
• Nucleic acid-binding, OB-fold
• S1 domain

CATH:

• RNA polymerase Rpb7-like, N-terminal domain
• Nucleic acid-binding proteins

Chains: F, R
Length: 113 amino acids
Theoretical weight: 12.83 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q7LXK4 (Residues: 1-113; Coverage: 100%)

Gene names: SSO0751, rpo4, rpoF
Pfam: RNA polymerase Rpb4
InterPro:

• DNA-directed RNA polymerase subunit Rpo4
• HRDC-like superfamily
• RNA polymerase subunit Rpb4/RPC9
• HRDC domain superfamily

CATH:

• Helix Hairpins
• HRDC domain

Chains: G, S
Length: 132 amino acids
Theoretical weight: 14.99 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980L5 (Residues: 1-132; Coverage: 100%)

Gene names: SSO0277, rpo8, rpoG
Pfam: DNA-directed RNA polymerase, subunit G
InterPro:

• Nucleic acid-binding, OB-fold
• DNA-directed RNA polymerase subunit Rpo8

CATH: Nucleic acid-binding proteins

Chains: H, T
Length: 84 amino acids
Theoretical weight: 9.69 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980Q9 (Residues: 1-84; Coverage: 100%)

Gene names: SSO5468, rpo5, rpoH
Pfam: RNA polymerase Rpb5, C-terminal domain
InterPro:

• RPB5-like RNA polymerase subunit superfamily
• DNA-directed RNA polymerase subunit Rpo5/Rpb5
• RNA polymerase, subunit H/Rpb5 C-terminal
• RNA polymerase, subunit H/Rpb5, conserved site

CATH: RPB5-like RNA polymerase subunit

Chains: K, U
Length: 95 amino acids
Theoretical weight: 10.87 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q97ZJ9 (Residues: 1-95; Coverage: 100%)

Gene names: SSO6768, rpo6, rpoK
Pfam: RNA polymerase Rpb6
InterPro:

• RPB6/omega subunit-like superfamily
• RNA polymerase, subunit omega/Rpo6/RPB6
• Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit
• DNA-directed RNA polymerase, 14-18kDa subunit, conserved site

CATH: Eukaryotic RPB6 RNA polymerase subunit

Chains: L, V
Length: 92 amino acids
Theoretical weight: 10.3 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980K0 (Residues: 1-92; Coverage: 100%)

Gene names: SSO5577, rpo11, rpoL
Pfam: RNA polymerase Rpb3/Rpb11 dimerisation domain
InterPro:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase subunit Rpo11-like
• DNA-directed RNA polymerase, RBP11-like dimerisation domain
• DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

CATH: RNA polymerase, RBP11-like subunit

Chains: N, W
Length: 66 amino acids
Theoretical weight: 7.6 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980Z8 (Residues: 1-66; Coverage: 100%)

Gene names: SSO5140, rpo10, rpoN
Pfam: RNA polymerases N / 8 kDa subunit
InterPro:

• DNA-directed RNA polymerase subunit RPABC5/Rpb10
• RNA polymerase subunit RPB10
• RNA polymerases, subunit N, zinc binding site

CATH: Homeodomain-like

Chains: P, X
Length: 48 amino acids
Theoretical weight: 5.61 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q97ZX7 (Residues: 1-48; Coverage: 100%)

Gene names: SSO5865, rpo12, rpoP
InterPro:

• RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
• RNA polymerase subunit RPABC4/transcription elongation factor Spt4
• DNA-directed RNA polymerase subunit Rpo12

CATH: RNA polymerase ii, chain L

Chains: Y, Z
Length: 104 amino acids
Theoretical weight: 12.2 KDa
Source organism: Saccharolobus solfataricus P2
UniProt:

• Canonical: Q980B8 (Residues: 1-104; Coverage: 100%)

Gene names: SSO0396, rpo13
Pfam: RNA polymerase Rpo13 subunit HTH domain
InterPro: RNA polymerase Rpo13 subunit HTH domain
CATH: DNA Excision Repair, Uvrb; Chain A