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Crystal structure of VPA0735 from Vibrio parahaemolyticus in monoclinic form, NorthEast Structural Genomics target VpR109

X-ray diffraction
2.1Å resolution
PDB entry 3vb9 coloured by chain, front view.
PDB entry 3vb9 coloured by chain, side view.
PDB entry 3vb9 coloured by chain, top view.
Source organism: Vibrio parahaemolyticus
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: DUF1254 domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 35216.96 Å2
Buried surface area: 7308.84 Å2
Dissociation area: 3,422.42 Å2
Dissociation energy (ΔGdiss): 38.5 kcal/mol
Dissociation entropy (TΔSdiss): 14.8 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-183317
Assembly 2 (preferred)
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Assembly Name: DUF1254 domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 34384.6 Å2
Buried surface area: 7068.59 Å2
Dissociation area: 3,362.84 Å2
Dissociation energy (ΔGdiss): 35.52 kcal/mol
Dissociation entropy (TΔSdiss): 15.15 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-183317

Macromolecules

DUF1254 domain-containing protein
Chains: A, B, C, D
Length: 483 amino acids
Theoretical weight: 55.94 KDa
Source organism: Vibrio parahaemolyticus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87I71 (Residues: 1-483; Coverage: 100%)
Gene name: VPA0735
Pfam:
InterPro:
CATH:
DUF1254 domain-containing protein in PDB entry 3vb9, assembly 2, front view.
DUF1254 domain-containing protein in PDB entry 3vb9, assembly 2, side view.
DUF1254 domain-containing protein in PDB entry 3vb9, assembly 2, top view.
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