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Crystal Structure of Vancomycin Resistance D,D-dipeptidase VanXYg in complex with D-Ala-D-Ala phosphinate analog

X-ray diffraction
1.364Å resolution
PDB entry 4muq coloured by chain, front view.
PDB entry 4muq coloured by chain, side view.
PDB entry 4muq coloured by chain, top view.
Source organism: Enterococcus faecalis
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Peptidase M15B domain-containing protein
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Multimeric state: monomeric
Accessible surface area: 12986.06 Å2
Buried surface area: 1486.06 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-191889

Macromolecules

Peptidase M15B domain-containing protein
Chain: A
Length: 255 amino acids
Theoretical weight: 29.59 KDa
Source organism: Enterococcus faecalis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9KHL8 (Residues: 1-254; Coverage: 100%)
Gene names: vanXYG, vanYG2
Pfam: D-alanyl-D-alanine carboxypeptidase
InterPro:
CATH:
Peptidase M15B domain-containing protein in PDB entry 4muq, assembly 1, front view.
Peptidase M15B domain-containing protein in PDB entry 4muq, assembly 1, side view.
Peptidase M15B domain-containing protein in PDB entry 4muq, assembly 1, top view.
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