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Protein complex of Clp1 bound to ATP and Mg2+ with Pcf11deltaN454deltaC563 of S. cerevisiae

X-ray diffraction
2.4Å resolution
PDB entry 4oi4 coloured by chain, front view.
PDB entry 4oi4 coloured by chain, side view.
PDB entry 4oi4 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Assemblies composition:
hetero dimer (preferred)
monomeric
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Protein PCF11 and mRNA cleavage and polyadenylation factor CLP1
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Multimeric state: hetero dimer
Accessible surface area: 19678.17 Å2
Buried surface area: 4557.16 Å2
Dissociation area: 1,591.85 Å2
Dissociation energy (ΔGdiss): 11.74 kcal/mol
Dissociation entropy (TΔSdiss): 10.02 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-153823
Assembly 2
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Assembly Name: Protein PCF11 and mRNA cleavage and polyadenylation factor CLP1
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Multimeric state: hetero dimer
Accessible surface area: 19382.76 Å2
Buried surface area: 4792.23 Å2
Dissociation area: 1,566.76 Å2
Dissociation energy (ΔGdiss): 9.21 kcal/mol
Dissociation entropy (TΔSdiss): 9.84 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-153823
Assembly 3
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Assembly Name: Protein PCF11
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Multimeric state: monomeric
Accessible surface area: 1056.84 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-153821

Macromolecules

mRNA cleavage and polyadenylation factor CLP1
Chains: A, C
Length: 453 amino acids
Theoretical weight: 51.31 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q08685 (Residues: 1-445; Coverage: 100%)
Gene names: CLP1, YOR250C
Pfam:
InterPro:
CATH:
mRNA cleavage and polyadenylation factor CLP1 in PDB entry 4oi4, assembly 1, front view.
mRNA cleavage and polyadenylation factor CLP1 in PDB entry 4oi4, assembly 1, side view.
mRNA cleavage and polyadenylation factor CLP1 in PDB entry 4oi4, assembly 1, top view.
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Protein PCF11
Chains: B, D, U
Length: 115 amino acids
Theoretical weight: 12.83 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P39081 (Residues: 454-563; Coverage: 18%)
Gene names: PCF11, YD9934.13C, YDR228C
Pfam: Pcf11, Clp1-interaction domain
InterPro: Pcf11, Clp1-ID
Protein PCF11 in PDB entry 4oi4, assembly 1, front view.
Protein PCF11 in PDB entry 4oi4, assembly 1, side view.
Protein PCF11 in PDB entry 4oi4, assembly 1, top view.
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