Structure analysis

Ferredoxin-like domain of nucleoporin Nup54 bound to a nanobody

X-ray diffraction
1.55Å resolution
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero dimer
Accessible surface area: 11848.86 Å2
Buried surface area: 2175.05 Å2
Dissociation area: 1,087.52 Å2
Dissociation energy (ΔGdiss): 3.07 kcal/mol
Dissociation entropy (TΔSdiss): 11.28 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-207978

Macromolecules

Chain: B
Length: 131 amino acids
Theoretical weight: 14.34 KDa
Source organism: Camelus dromedarius
Expression system: Escherichia coli
InterPro:
CATH: Immunoglobulins
1131102030405060708090100110120130
 
50100AGTGSGQVQLQESGGGLVQPGGSLRLSCVVSGDYYAIGWFRQAPGKEREGVAAISSRDGSTYYPDAVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADRRQRWGPYYYLSALEYVYWGQGTQVTVSS
Chains
RSRZ Outlier Chain A (auth B)
Chain A (auth B)
Domains
Secondary structure
Flexibility predictions
Early folding residue predictions
Interaction interfaces
Sequence conservation

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Chain: A
Length: 143 amino acids
Theoretical weight: 15.67 KDa
Source organism: Xenopus laevis
Expression system: Escherichia coli
UniProt:
  • Canonical: K9ZTJ6 (Residues: 212-349; Coverage: 26%)
Gene names: nup54, nup54.S
PDBe-KB: UniProt Coverage View: K9ZTJ6  
114320406080100120140
 
50100
UniProt
K9ZTJ6
Chains
Secondary structure
Flexibility predictions
Early folding residue predictions
Sequence conservation

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