Structure analysis

Designed armadillo repeat protein YIIIM''6AII in complex with pD_(KR)5

X-ray diffraction
2.3Å resolution
Assemblies composition:
hetero dimer (preferred)
monomeric
Entry contents: 2 distinct polypeptide molecules

Assemblies

Assembly 1
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Multimeric state: hetero dimer
Accessible surface area: 19508.02 Å2
Buried surface area: 2990.57 Å2
Dissociation area: 1,188.9 Å2
Dissociation energy (ΔGdiss): 0.19 kcal/mol
Dissociation entropy (TΔSdiss): 12.03 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-137222
Assembly 2 (preferred)
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Multimeric state: hetero dimer
Accessible surface area: 19398.69 Å2
Buried surface area: 2282.6 Å2
Dissociation area: 1,098.27 Å2
Dissociation energy (ΔGdiss): -9.02 kcal/mol
Dissociation entropy (TΔSdiss): 12.05 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-137222
Assembly 3
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Multimeric state: hetero dimer
Accessible surface area: 19639.65 Å2
Buried surface area: 2638.83 Å2
Dissociation area: 949.1 Å2
Dissociation energy (ΔGdiss): -2.98 kcal/mol
Dissociation entropy (TΔSdiss): 12 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-137222
Assembly 4
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Multimeric state: hetero dimer
Accessible surface area: 18812.04 Å2
Buried surface area: 3101.77 Å2
Dissociation area: 1,215.4 Å2
Dissociation energy (ΔGdiss): -5.65 kcal/mol
Dissociation entropy (TΔSdiss): 11.95 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-137222
Assembly 5
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Multimeric state: monomeric
Accessible surface area: 13974.2 Å2
Buried surface area: 324.02 Å2
Dissociation area: 33.06 Å2
Dissociation energy (ΔGdiss): 5.39 kcal/mol
Dissociation entropy (TΔSdiss): 0.04 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-165985
Assembly 6
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Multimeric state: monomeric
Accessible surface area: 13992.19 Å2
Buried surface area: 321.06 Å2
Dissociation area: 33.6 Å2
Dissociation energy (ΔGdiss): 5.37 kcal/mol
Dissociation entropy (TΔSdiss): 0.04 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-165985
Assembly 7
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Multimeric state: monomeric
Accessible surface area: 14091.04 Å2
Buried surface area: 728.82 Å2
Dissociation area: 28.62 Å2
Dissociation energy (ΔGdiss): 4.26 kcal/mol
Dissociation entropy (TΔSdiss): 0.04 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-165985
Assembly 8
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Multimeric state: monomeric
Accessible surface area: 14084.16 Å2
Buried surface area: 125.5 Å2
Dissociation area: 26.2 Å2
Dissociation energy (ΔGdiss): 3.92 kcal/mol
Dissociation entropy (TΔSdiss): 0.04 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-165985

Macromolecules

Chains: A, C, E, G, I, J, K, L
Length: 328 amino acids
Theoretical weight: 34.35 KDa
Source organism: synthetic construct
Expression system: Escherichia coli K-12
InterPro:
132850100150200250300
 
100200300
Chains
RSRZ Outlier Chain A (auth A)
Chain A (auth A)
RSRZ Outlier Chain C (auth C)
Chain C (auth C)
RSRZ Outlier Chain E (auth E)
Chain E (auth E)
RSRZ Outlier Chain G (auth G)
Chain G (auth G)
RSRZ Outlier Chain I (auth I)
Chain I (auth I)
RSRZ Outlier Chain J (auth J)
Chain J (auth J)
Chain K (auth K)
RSRZ Outlier Chain L (auth L)
Chain L (auth L)
Domains
Secondary structure
Flexibility predictions
Early folding residue predictions
Ligand binding sites
Interaction interfaces
Sequence conservation

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Chains: B, D, F, H
Length: 109 amino acids
Theoretical weight: 11.48 KDa
Source organism: Lambdavirus lambda
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: P03712 (Residues: 21-110; Coverage: 82%)
Gene names: D, lambdap07
Pfam: Bacteriophage lambda head decoration protein D
InterPro:
CATH: Head decoration protein D
PDBe-KB: UniProt Coverage View: P03712  
1109102030405060708090100
 
50100
UniProt
P03712
Chains
Domains
Secondary structure
Flexibility predictions
Early folding residue predictions
Sequence conservation

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