Assemblies
Assembly Name:
Large ribosomal protein and RNA
Multimeric state:
hetero 26-mer
Accessible surface area:
457385.67 Å2
Buried surface area:
158470.14 Å2
Dissociation area:
699.29
Å2
Dissociation energy (ΔGdiss):
4.49
kcal/mol
Dissociation entropy (TΔSdiss):
12.84
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-140920
Macromolecules
Chain: A
Length: 277 amino acids
Theoretical weight: 30.22 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam:
InterPro:
Length: 277 amino acids
Theoretical weight: 30.22 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: P60430 (Residues: 1-277; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2, bacterial/organellar-type
- Nucleic acid-binding, OB-fold
- Large ribosomal subunit protein uL2
- Large ribosomal subunit protein uL2, RNA-binding domain
- Large ribosomal subunit protein uL2, domain 2
- Large ribosomal subunit protein uL2, C-terminal
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL2, domain 3
- Large ribosomal subunit protein uL2, conserved site
Chain: B
Length: 220 amino acids
Theoretical weight: 23.76 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L3
InterPro:
Length: 220 amino acids
Theoretical weight: 23.76 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW06 (Residues: 1-220; Coverage: 100%)
Pfam: Ribosomal protein L3
InterPro:
Chain: C
Length: 207 amino acids
Theoretical weight: 22.5 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L4/L1 family
InterPro:
Length: 207 amino acids
Theoretical weight: 22.5 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW07 (Residues: 1-207; Coverage: 100%)
Pfam: Ribosomal protein L4/L1 family
InterPro:
Chain: D
Length: 179 amino acids
Theoretical weight: 20.3 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam:
InterPro:
Length: 179 amino acids
Theoretical weight: 20.3 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW18 (Residues: 1-179; Coverage: 100%)
Pfam:
InterPro:
Chain: E
Length: 178 amino acids
Theoretical weight: 19.82 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L6
InterPro:
Length: 178 amino acids
Theoretical weight: 19.82 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW21 (Residues: 1-178; Coverage: 100%)
Pfam: Ribosomal protein L6
InterPro:
Chain: G
Length: 145 amino acids
Theoretical weight: 16.36 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L13
InterPro:
Length: 145 amino acids
Theoretical weight: 16.36 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW38 (Residues: 1-145; Coverage: 100%)
Pfam: Ribosomal protein L13
InterPro:
Chain: H
Length: 122 amino acids
Theoretical weight: 13.16 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L14p/L23e
InterPro:
Length: 122 amino acids
Theoretical weight: 13.16 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW16 (Residues: 1-122; Coverage: 100%)
Pfam: Ribosomal protein L14p/L23e
InterPro:
- Large ribosomal subunit protein uL14
- Large ribosomal subunit protein uL14, bacterial-type
- Large ribosomal subunit protein uL14 superfamily
- Large ribosomal subunit protein uL14, conserved site
Chain: I
Length: 140 amino acids
Theoretical weight: 15.02 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Length: 140 amino acids
Theoretical weight: 15.02 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: P0A0F8 (Residues: 1-140; Coverage: 96%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Chain: J
Length: 144 amino acids
Theoretical weight: 16.27 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L16p/L10e
InterPro:
Length: 144 amino acids
Theoretical weight: 16.27 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW13 (Residues: 1-144; Coverage: 100%)
Pfam: Ribosomal protein L16p/L10e
InterPro:
- Large ribosomal subunit protein uL16, bacterial-type
- Large ribosomal subunit protein uL16 superfamily
- Large ribosomal subunit protein uL16
- Large ribosomal subunit protein uL16 domain
- Large ribosomal subunit protein uL16, conserved site
Chain: K
Length: 122 amino acids
Theoretical weight: 13.77 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L17
InterPro:
Length: 122 amino acids
Theoretical weight: 13.77 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW33 (Residues: 1-122; Coverage: 100%)
Pfam: Ribosomal protein L17
InterPro:
- Large ribosomal subunit protein bL17
- Large ribosomal subunit protein bL17 superfamily
- Large ribosomal subunit protein bL17, conserved site
Chain: L
Length: 119 amino acids
Theoretical weight: 13.12 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
CATH: Nucleotidyltransferase; domain 5
Length: 119 amino acids
Theoretical weight: 13.12 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW22 (Residues: 1-119; Coverage: 100%)
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
CATH: Nucleotidyltransferase; domain 5
Chain: M
Length: 116 amino acids
Theoretical weight: 13.39 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L19
InterPro:
Length: 116 amino acids
Theoretical weight: 13.39 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FZ42 (Residues: 1-116; Coverage: 100%)
Pfam: Ribosomal protein L19
InterPro:
Chain: N
Length: 118 amino acids
Theoretical weight: 13.72 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L20
InterPro:
Length: 118 amino acids
Theoretical weight: 13.72 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FXQ1 (Residues: 1-118; Coverage: 100%)
Pfam: Ribosomal protein L20
InterPro:
Chain: O
Length: 102 amino acids
Theoretical weight: 11.35 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
Length: 102 amino acids
Theoretical weight: 11.35 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FXS8 (Residues: 1-102; Coverage: 100%)
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
Chain: P
Length: 117 amino acids
Theoretical weight: 12.86 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L22p/L17e
InterPro:
Length: 117 amino acids
Theoretical weight: 12.86 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW11 (Residues: 1-117; Coverage: 100%)
Pfam: Ribosomal protein L22p/L17e
InterPro:
- Large ribosomal subunit protein uL22, bacterial/chloroplast-type
- Ribosomal protein uL22 superfamily
- Large ribosomal subunit protein uL22, bacterial/organelle-type
- Large ribosomal subunit protein uL22
- Large ribosomal subunit protein uL22, conserved site
Chain: Q
Length: 91 amino acids
Theoretical weight: 10.63 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L23
InterPro:
Length: 91 amino acids
Theoretical weight: 10.63 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW08 (Residues: 1-91; Coverage: 100%)
Pfam: Ribosomal protein L23
InterPro:
- Ribosomal protein uL23/eL15/eS24 core domain superfamily
- Nucleotide-binding alpha-beta plait domain superfamily
- Large ribosomal subunit protein uL23-like
Chain: R
Length: 105 amino acids
Theoretical weight: 11.56 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam:
InterPro:
Length: 105 amino acids
Theoretical weight: 11.56 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW17 (Residues: 1-105; Coverage: 100%)
Pfam:
InterPro:
Chain: S
Length: 217 amino acids
Theoretical weight: 23.81 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam:
InterPro:
Length: 217 amino acids
Theoretical weight: 23.81 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2G0S0 (Residues: 1-217; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal
- Ribosomal protein bL25, long-form
- Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
- Large ribosomal subunit protein bL25, L25 domain
- Large ribosomal subunit protein bL25, C-terminal
- Large ribosomal subunit protein bL25, beta domain
Chain: T
Length: 94 amino acids
Theoretical weight: 10.33 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal L27 protein
InterPro:
Length: 94 amino acids
Theoretical weight: 10.33 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FXT0 (Residues: 1-94; Coverage: 100%)
Pfam: Ribosomal L27 protein
InterPro:
Chain: V
Length: 69 amino acids
Theoretical weight: 8.11 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal L29 protein
InterPro:
Length: 69 amino acids
Theoretical weight: 8.11 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FW14 (Residues: 1-69; Coverage: 100%)
Pfam: Ribosomal L29 protein
InterPro:
Chain: W
Length: 59 amino acids
Theoretical weight: 6.57 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L30p/L7e
InterPro:
Length: 59 amino acids
Theoretical weight: 6.57 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: P0A0G2 (Residues: 1-59; Coverage: 100%)
Pfam: Ribosomal protein L30p/L7e
InterPro:
- Large ribosomal subunit protein uL30, bacterial-type
- Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
- Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
Chain: Z
Length: 58 amino acids
Theoretical weight: 6.66 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal L32p protein family
InterPro:
Length: 58 amino acids
Theoretical weight: 6.66 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FZF1 (Residues: 1-58; Coverage: 100%)
Pfam: Ribosomal L32p protein family
InterPro:
Chain: 2
Length: 45 amino acids
Theoretical weight: 5.45 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L34
InterPro:
CATH: Helix Hairpins
Length: 45 amino acids
Theoretical weight: 5.45 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FUQ0 (Residues: 1-45; Coverage: 100%)
Pfam: Ribosomal protein L34
InterPro:
CATH: Helix Hairpins
Chain: 3
Length: 66 amino acids
Theoretical weight: 7.72 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
Pfam: Ribosomal protein L35
InterPro:
Length: 66 amino acids
Theoretical weight: 7.72 KDa
Source organism: Staphylococcus aureus subsp. aureus NCTC 8325
UniProt:
- Canonical: Q2FXQ0 (Residues: 1-66; Coverage: 100%)
Pfam: Ribosomal protein L35
InterPro:
Name:
23S ribosomal RNA
Representative chains: X
Length: 2923 nucleotides
Theoretical weight: 946.69 KDa
Rfam: Bacterial large subunit ribosomal RNA
Representative chains: X
Length: 2923 nucleotides
Theoretical weight: 946.69 KDa
Rfam: Bacterial large subunit ribosomal RNA
Name:
5S ribosomal RNA
Representative chains: Y
Length: 114 nucleotides
Theoretical weight: 36.69 KDa
Rfam: 5S ribosomal RNA
Representative chains: Y
Length: 114 nucleotides
Theoretical weight: 36.69 KDa
Rfam: 5S ribosomal RNA