Protein Data Bank in Europe

Chain: A
Length: 1460 amino acids
Theoretical weight: 162.52 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P04051 (Residues: 1-1460; Coverage: 100%)

Gene names: O3254, RPC1, RPC160, RPO31, YOR116C, YOR3254C
Pfam:

• RNA polymerase Rpb1, domain 1
• RNA polymerase Rpb1, domain 2
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5

InterPro:

• RNA polymerase Rpb1, clamp domain superfamily
• RNA polymerase Rpb1, domain 1
• DNA-directed RNA polymerase, subunit beta-prime
• DNA-directed RNA polymerase III subunit RPC1, N-terminal
• RNA polymerase, N-terminal
• RNA polymerase, alpha subunit
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 3 superfamily
• RNA polymerase Rpb1, funnel domain superfamily
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5
• DNA-directed RNA polymerase III subunit RPC1, C-terminal

Chain: B
Length: 1149 amino acids
Theoretical weight: 129.63 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P22276 (Residues: 1-1149; Coverage: 100%)

Gene names: RET1, RPC128, RPC2, YOR207C
Pfam:

• RNA polymerase beta subunit
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• RNA polymerase Rpb2, domain 5
• RNA polymerase Rpb2, domain 6
• RNA polymerase Rpb2, domain 7

InterPro:

• DNA-directed RNA polymerase, subunit 2
• RNA polymerase, beta subunit, protrusion
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 2 superfamily
• RNA polymerase Rpb2, domain 3
• RNA polymerase Rpb2, domain 4
• RNA polymerase Rpb2, domain 5
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
• RNA polymerase Rpb2, OB-fold
• RNA polymerase, beta subunit, conserved site
• RNA polymerase Rpb2, domain 7

Chain: C
Length: 335 amino acids
Theoretical weight: 37.73 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P07703 (Residues: 1-335; Coverage: 100%)

Gene names: P8283.18, RPC40, RPC5, YPR110C
Pfam:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/RpoA insert domain

InterPro:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerases I and III subunit AC40
• DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1
• DNA-directed RNA polymerase, RpoA/D/Rpb3-type
• DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
• DNA-directed RNA polymerase, insert domain superfamily
• DNA-directed RNA polymerase, insert domain

CATH:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase, insert domain

Chain: D
Length: 161 amino acids
Theoretical weight: 18.62 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P47076 (Residues: 1-161; Coverage: 100%)

Gene names: J1349, RPC17, YJL011C
Pfam: RNA polymerase Rpb4
InterPro:

• DNA-directed RNA polymerase III subunit RPC9
• HRDC-like superfamily
• RNA polymerase subunit Rpb4/RPC9
• Rpb4/RPC9 superfamily

Chain: E
Length: 215 amino acids
Theoretical weight: 25.12 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P20434 (Residues: 1-215; Coverage: 100%)

Gene names: RPA7, RPB5, RPC9, YBR1204, YBR154C
Pfam:

• RNA polymerase Rpb5, N-terminal domain
• RNA polymerase Rpb5, C-terminal domain

InterPro:

• DNA-directed RNA polymerase subunit Rpo5/Rpb5
• RNA polymerase Rpb5, N-terminal domain superfamily
• RNA polymerase, Rpb5, N-terminal
• RPB5-like RNA polymerase subunit superfamily
• RNA polymerase, subunit H/Rpb5 C-terminal
• RNA polymerase, subunit H/Rpb5, conserved site

CATH:

• RNA polymerase, Rpb5, N-terminal domain
• RPB5-like RNA polymerase subunit

Chain: F
Length: 155 amino acids
Theoretical weight: 17.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P20435 (Residues: 1-155; Coverage: 100%)

Gene names: P9677.8, RPB6, RPO26, YPR187W
Pfam: RNA polymerase Rpb6
InterPro:

• Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit
• DNA-directed RNA polymerase, subunit RPB6
• RPB6/omega subunit-like superfamily
• RNA polymerase, subunit omega/Rpo6/RPB6
• DNA-directed RNA polymerase, 14-18kDa subunit, conserved site

CATH: Eukaryotic RPB6 RNA polymerase subunit

Chain: G
Length: 212 amino acids
Theoretical weight: 24.35 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P35718 (Residues: 1-212; Coverage: 100%)

Gene names: RPC25, UNF1, YKL1, YKL144C
Pfam:

• SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
• RNA polymerase III subunit Rpc25

InterPro:

• DNA-directed RNA polymerase, subunit E/RPC8
• RNA polymerase Rpb7-like, N-terminal domain superfamily
• RNA polymerase subunit Rpb7-like
• RNA polymerase Rpb7-like , N-terminal
• Nucleic acid-binding, OB-fold
• RNA polymerase III, subunit Rpc25

CATH: RNA polymerase Rpb7-like, N-terminal domain

Chain: H
Length: 146 amino acids
Theoretical weight: 16.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P20436 (Residues: 1-146; Coverage: 100%)

Gene names: RPB8, YOR224C, YOR50-14
Pfam: RNA polymerase Rpb8
InterPro:

• Nucleic acid-binding, OB-fold
• DNA-directed RNA polymerases I, II, and III subunit RPABC3

CATH: Nucleic acid-binding proteins

Chain: I
Length: 110 amino acids
Theoretical weight: 12.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: Q04307 (Residues: 1-110; Coverage: 100%)

Gene names: RPC11, YD9609.01C, YDR045C
Pfam:

• RNA polymerases M/15 Kd subunit
• Transcription factor S-II (TFIIS)

InterPro:

• DNA-directed RNA polymerase, M/15kDa subunit
• DNA-directed RNA polymerase subunit/transcription factor S
• DNA-directed RNA polymerase M, 15kDa subunit, conserved site
• Pol III subunit C11, C-terminal zinc ribbon
• Zinc finger, TFIIS-type

Chain: J
Length: 70 amino acids
Theoretical weight: 8.29 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P22139 (Residues: 1-70; Coverage: 100%)

Gene names: RPB10, YOR210W
Pfam: RNA polymerases N / 8 kDa subunit
InterPro:

• DNA-directed RNA polymerase subunit RPABC5/Rpb10
• RNA polymerase subunit RPB10
• RNA polymerases, subunit N, zinc binding site

CATH: Homeodomain-like

Chain: K
Length: 142 amino acids
Theoretical weight: 16.17 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P28000 (Residues: 1-142; Coverage: 100%)

Gene names: N1937, RPC19, YNL113W
Pfam: RNA polymerase Rpb3/Rpb11 dimerisation domain
InterPro:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerases I and III subunit AC19
• DNA-directed RNA polymerase subunit Rpo11-like
• DNA-directed RNA polymerase, RBP11-like dimerisation domain
• DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

CATH: RNA polymerase, RBP11-like subunit

Chain: L
Length: 70 amino acids
Theoretical weight: 7.73 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P40422 (Residues: 1-70; Coverage: 100%)

Gene names: RPB12, RPC10, YHR143BW, YHR143W-A
Pfam: DNA directed RNA polymerase, 7 kDa subunit
InterPro:

• DNA-directed RNA polymerases I, II, and III subunit RPABC4
• RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
• RNA polymerase subunit RPABC4/transcription elongation factor Spt4

CATH: RNA polymerase ii, chain L

Chain: M
Length: 282 amino acids
Theoretical weight: 32.18 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P36121 (Residues: 1-282; Coverage: 100%)

Gene names: RPC37, YKR025W
Pfam: RPC5 protein
InterPro: DNA-directed RNA polymerase III subunit Rpc5

Chain: N
Length: 422 amino acids
Theoretical weight: 46.75 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P25441 (Residues: 1-422; Coverage: 100%)

Gene names: D1557, RPC4, RPC53, YDL150W
Pfam: RNA polymerase III RPC4
InterPro: DNA-directed RNA polymerase III subunit RPC4

Chain: O
Length: 654 amino acids
Theoretical weight: 74.11 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P32349 (Residues: 1-654; Coverage: 100%)

Gene names: P9677.11, RPC3, RPC82, YPR190C
Pfam:

• RNA polymerase III subunit RPC82 helix-turn-helix domain
• RNA polymerase III subunit RPC82
• POLR3C, C-terminal winged-helix domain
• DNA-directed RNA polymerase III subunit RPC3, helical hairpin domain

InterPro:

• Winged helix-like DNA-binding domain superfamily
• DNA-directed RNA polymerase III subunit RPC3
• RNA polymerase III subunit RPC82-related, helix-turn-helix
• RNA polymerase III Rpc82, C -terminal

Chain: P
Length: 317 amino acids
Theoretical weight: 36.17 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P32910 (Residues: 1-317; Coverage: 100%)

Gene names: N2031, RPC34, YNR003C
Pfam: RNA polymerase Rpc34 subunit
InterPro:

• Winged helix-like DNA-binding domain superfamily
• RNA polymerase Rpc34
• RNA polymerase Rpc34-like
• Winged helix DNA-binding domain superfamily

Chain: Q
Length: 251 amino acids
Theoretical weight: 27.75 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P17890 (Residues: 1-251; Coverage: 100%)

Gene names: ACP2, N1769, RPC31, RPC8, YNL151C
Pfam: DNA-directed RNA polymerase III subunit Rpc31
InterPro: DNA-directed RNA polymerase III, subunit Rpc31