Protein Data Bank in Europe

Chain: A
Length: 1664 amino acids
Theoretical weight: 186.68 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P10964 (Residues: 1-1664; Coverage: 100%)

Gene names: O6276, RPA1, RPA190, RRN1, YOR341W
Pfam:

• RNA polymerase Rpb1, domain 1
• RNA polymerase Rpb1, domain 2
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5

InterPro:

• RNA polymerase Rpb1, clamp domain superfamily
• RNA polymerase Rpb1, domain 1
• DNA-directed RNA pol I, largest subunit, N-terminal domain
• DNA-directed RNA polymerase, subunit beta-prime
• RNA polymerase, N-terminal
• RNA polymerase, alpha subunit
• RNA polymerase Rpb1, domain 3
• RNA polymerase Rpb1, domain 3 superfamily
• RNA polymerase Rpb1, funnel domain superfamily
• RNA polymerase Rpb1, domain 4
• RNA polymerase Rpb1, domain 5
• DNA-directed RNA pol I, largest subunit, C-terminal domain

Chain: B
Length: 1203 amino acids
Theoretical weight: 135.91 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P22138 (Residues: 1-1203; Coverage: 100%)

Gene names: RPA135, RPA2, RRN2, SRP3, YP9531.03C, YPR010C
Pfam:

• RNA polymerase beta subunit
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 3
• RNA polymerase I, Rpa2 specific domain
• RNA polymerase Rpb2, domain 6
• RNA polymerase Rpb2, domain 7

InterPro:

• DNA-directed RNA polymerase, subunit 2
• RNA polymerase, beta subunit, protrusion
• RNA polymerase Rpb2, domain 2
• RNA polymerase Rpb2, domain 2 superfamily
• RNA polymerase Rpb2, domain 3
• DNA-directed RNA polymerase I subunit RPA2, domain 4
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
• DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
• RNA polymerase Rpb2, OB-fold
• RNA polymerase, beta subunit, conserved site
• RNA polymerase Rpb2, domain 7

CATH:

• RNA polymerase Rpb2, domain 2
• Hypothetical Protein Ta0175; Chain: A, domain 2
• DNA-directed RNA polymerase, subunit 2, domain 6
• OB fold (Dihydrolipoamide Acetyltransferase, E2P)
• RNA polymerase alpha subunit dimerisation domain

Chain: C
Length: 335 amino acids
Theoretical weight: 37.73 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P07703 (Residues: 1-335; Coverage: 100%)

Gene names: P8283.18, RPC40, RPC5, YPR110C
Pfam:

• RNA polymerase Rpb3/Rpb11 dimerisation domain
• RNA polymerase Rpb3/RpoA insert domain

InterPro:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerases I and III subunit AC40
• DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1
• DNA-directed RNA polymerase, RpoA/D/Rpb3-type
• DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
• DNA-directed RNA polymerase, insert domain superfamily
• DNA-directed RNA polymerase, insert domain

CATH:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerase, insert domain

Chain: D
Length: 137 amino acids
Theoretical weight: 14.6 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P50106 (Residues: 1-137; Coverage: 100%)

Gene names: RPA14, YD8358.11, YDR156W
Pfam: Yeast RNA polymerase I subunit RPA14
InterPro: RNA polymerase I, subunit Rpa14, fungi
CATH: Single alpha-helices involved in coiled-coils or other helix-helix interfaces

Chain: E
Length: 215 amino acids
Theoretical weight: 25.12 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P20434 (Residues: 1-215; Coverage: 100%)

Gene names: RPA7, RPB5, RPC9, YBR1204, YBR154C
Pfam:

• RNA polymerase Rpb5, N-terminal domain
• RNA polymerase Rpb5, C-terminal domain

InterPro:

• DNA-directed RNA polymerase subunit Rpo5/Rpb5
• RNA polymerase Rpb5, N-terminal domain superfamily
• RNA polymerase, Rpb5, N-terminal
• RPB5-like RNA polymerase subunit superfamily
• RNA polymerase, subunit H/Rpb5 C-terminal
• RNA polymerase, subunit H/Rpb5, conserved site

CATH:

• RNA polymerase, Rpb5, N-terminal domain
• RPB5-like RNA polymerase subunit

Chain: F
Length: 155 amino acids
Theoretical weight: 17.93 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P20435 (Residues: 1-155; Coverage: 100%)

Gene names: P9677.8, RPB6, RPO26, YPR187W
Pfam: RNA polymerase Rpb6
InterPro:

• Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit
• DNA-directed RNA polymerase, subunit RPB6
• RPB6/omega subunit-like superfamily
• RNA polymerase, subunit omega/Rpo6/RPB6
• DNA-directed RNA polymerase, 14-18kDa subunit, conserved site

CATH: Eukaryotic RPB6 RNA polymerase subunit

Chain: G
Length: 326 amino acids
Theoretical weight: 36.26 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P46669 (Residues: 1-326; Coverage: 100%)

Gene names: O6271, RPA43, RRN12, YOR340C
Pfam:

• SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
• RPA43 OB domain in RNA Pol I

InterPro:

• RNA polymerase Rpb7-like, N-terminal domain superfamily
• Rpa43, N-terminal ribonucleoprotein (RNP) domain
• RNA polymerase subunit Rpb7-like
• RNA polymerase Rpb7-like , N-terminal
• RPA43, OB domain
• Nucleic acid-binding, OB-fold

Chain: H
Length: 146 amino acids
Theoretical weight: 16.53 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P20436 (Residues: 1-146; Coverage: 100%)

Gene names: RPB8, YOR224C, YOR50-14
Pfam: RNA polymerase Rpb8
InterPro:

• Nucleic acid-binding, OB-fold
• DNA-directed RNA polymerases I, II, and III subunit RPABC3

CATH: Nucleic acid-binding proteins

Chain: I
Length: 125 amino acids
Theoretical weight: 13.68 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P32529 (Residues: 1-125; Coverage: 100%)

Gene names: J1747, RPA12, RRN4, YJR063W
Pfam:

• RNA polymerases M/15 Kd subunit
• Transcription factor S-II (TFIIS)

InterPro:

• DNA-directed RNA polymerase, M/15kDa subunit
• DNA-directed RNA polymerase subunit/transcription factor S
• DNA-directed RNA polymerase M, 15kDa subunit, conserved site
• Pol I subunit A12, C-terminal zinc ribbon
• Zinc finger, TFIIS-type

Chain: J
Length: 70 amino acids
Theoretical weight: 8.29 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P22139 (Residues: 1-70; Coverage: 100%)

Gene names: RPB10, YOR210W
Pfam: RNA polymerases N / 8 kDa subunit
InterPro:

• DNA-directed RNA polymerase subunit RPABC5/Rpb10
• RNA polymerase subunit RPB10
• RNA polymerases, subunit N, zinc binding site

CATH: Homeodomain-like

Chain: K
Length: 142 amino acids
Theoretical weight: 16.17 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P28000 (Residues: 1-142; Coverage: 100%)

Gene names: N1937, RPC19, YNL113W
Pfam: RNA polymerase Rpb3/Rpb11 dimerisation domain
InterPro:

• RNA polymerase, RBP11-like subunit
• DNA-directed RNA polymerases I and III subunit AC19
• DNA-directed RNA polymerase subunit Rpo11-like
• DNA-directed RNA polymerase, RBP11-like dimerisation domain
• DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

CATH: RNA polymerase, RBP11-like subunit

Chain: L
Length: 70 amino acids
Theoretical weight: 7.73 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:

• Canonical: P40422 (Residues: 1-70; Coverage: 100%)

Gene names: RPB12, RPC10, YHR143BW, YHR143W-A
Pfam: DNA directed RNA polymerase, 7 kDa subunit
InterPro:

• DNA-directed RNA polymerases I, II, and III subunit RPABC4
• RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
• RNA polymerase subunit RPABC4/transcription elongation factor Spt4

CATH: RNA polymerase ii, chain L