Function and Biology

Cryo-EM structure of the wild-type human serotonin transporter complexed with I-paroxetine and 8B6 Fab

Source organisms:
Biochemical function: serotonin binding
Biological process: conditioned place preference
Cellular component: serotonergic synapse

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF07654
Domain description: Immunoglobulin C1-set domain
Occurring in:
  1. Ig-like domain-containing protein
The deposited structure of PDB entry 6vrl contains 1 copy of Pfam domain PF07654 (Immunoglobulin C1-set domain) in Ig-like domain-containing protein. Showing 1 copy in chain B [auth C] (this domain is out of the observed residue ranges!).

PF07686
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Ig-like domain-containing protein
The deposited structure of PDB entry 6vrl contains 1 copy of Pfam domain PF07686 (Immunoglobulin V-set domain) in Ig-like domain-containing protein. Showing 1 copy in chain B [auth C].

PF00209
Domain description: Sodium:neurotransmitter symporter family
Occurring in:
  1. Sodium-dependent serotonin transporter
The deposited structure of PDB entry 6vrl contains 1 copy of Pfam domain PF00209 (Sodium:neurotransmitter symporter family) in Sodium-dependent serotonin transporter. Showing 1 copy in chain A.

PF03491
Domain description: Serotonin (5-HT) neurotransmitter transporter, N-terminus
Occurring in:
  1. Sodium-dependent serotonin transporter
The deposited structure of PDB entry 6vrl contains 1 copy of Pfam domain PF03491 (Serotonin (5-HT) neurotransmitter transporter, N-terminus) in Sodium-dependent serotonin transporter. Showing 1 copy in chain A (this domain is out of the observed residue ranges!).

InterPro InterPro annotations
IPR000175
Domain description: Sodium:neurotransmitter symporter
Occurring in:
  1. Sodium-dependent serotonin transporter
IPR013086
Domain description: Sodium:neurotransmitter symporter, serotonin, N-terminal
Occurring in:
  1. Sodium-dependent serotonin transporter
IPR003597
Domain description: Immunoglobulin C1-set
Occurring in:
  1. 8B6 antibody, heavy chain
  2. Ig-like domain-containing protein
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. 8B6 antibody, heavy chain
  2. Ig-like domain-containing protein
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. 8B6 antibody, heavy chain
  2. Ig-like domain-containing protein
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. 8B6 antibody, heavy chain
  2. Ig-like domain-containing protein
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. 8B6 antibody, heavy chain
  2. Ig-like domain-containing protein
IPR003599
Domain description: Immunoglobulin domain subtype
Occurring in:
  1. 8B6 antibody, heavy chain
  2. Ig-like domain-containing protein
IPR003006
Domain description: Immunoglobulin/major histocompatibility complex, conserved site
Occurring in:
  1. Ig-like domain-containing protein
IPR037272
Domain description: Sodium:neurotransmitter symporter superfamily
Occurring in:
  1. Sodium-dependent serotonin transporter