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Human pre-Bact-2 spliceosome

Source organism: Homo sapiens
Biochemical function: protein binding
Biological process: mRNA processing
Cellular component: nucleoplasm

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EC 3.6.4.13: RNA helicase

Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Systematic name:
ATP phosphohydrolase (RNA helix unwinding)
Alternative Name(s):
  • CSFV NS3 helicase
  • DBP2
  • DDX17
  • DDX25
  • DDX3
  • DDX3X
  • DDX3Y
  • DDX4
  • DDX5
  • DEAD-box RNA helicase
  • DEAD-box protein DED1
  • DEAH-box RNA helicase
  • DEAH-box protein 2
  • DED1
  • DbpA
  • Dex(H/D) RNA helicase
  • EIF4A helicase
  • EhDEAD1
  • EhDEAD1 RNA helicase
  • GRTH/DDX25
  • KOKV helicase
  • Mtr4p
  • NPH-II
  • Nonstructural protein 3 helicase
  • RHA
  • RNA helicase A
  • RNA helicase DDX3
  • RNA helicase Hera
  • RNA-dependent ATPase
  • TGBp1 NTPase/helicase domain
  • VRH1

EC 2.3.2.27: RING-type E3 ubiquitin transferase

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Systematic name:
[E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine:[acceptor protein]-L-lysine ubiquitin transferase (isopeptide bond-forming; RING-type)
Alternative Name(s):
  • RING E3 ligase
  • Ubiquitin transferase RING E3

EC 5.2.1.8: Peptidylprolyl isomerase

Reaction catalysed:
Peptidylproline (omega=180) = peptidylproline (omega=0)
Systematic name:
Peptidylproline cis-trans-isomerase
Alternative Name(s):
  • Cyclophilin
  • PPIase
  • Peptide bond isomerase
  • Peptidyl-prolyl cis-trans isomerase
  • Peptidylprolyl cis-trans isomerase
  • Rotamase

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00400
Domain description: WD domain, G-beta repeat
Occurring in:
  1. Pre-mRNA-processing factor 17
  2. U5 small nuclear ribonucleoprotein 40 kDa protein
  3. Pleiotropic regulator 1

PF01423
Domain description: LSM domain
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D2
  2. Small nuclear ribonucleoprotein F
  3. Small nuclear ribonucleoprotein E
  4. Small nuclear ribonucleoprotein G
  5. Small nuclear ribonucleoprotein Sm D3
  6. Small nuclear ribonucleoprotein-associated proteins B and B'
  7. Small nuclear ribonucleoprotein Sm D1

PF00076
Domain description: RNA recognition motif
Occurring in:
  1. RNA-binding motif protein, X-linked 2
  2. U2 small nuclear ribonucleoprotein B''
  3. Pre-mRNA-splicing factor RBM22
  4. Peptidyl-prolyl cis-trans isomerase E
  5. Splicing factor 3B subunit 4
  6. Splicing factor 3B subunit 6

PF02889
Domain description: Sec63 Brl domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase

PF00270
Domain description: DEAD/DEAH box helicase
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase

PF00240
Domain description: Ubiquitin family
Occurring in:
  1. Splicing factor 3A subunit 1
  2. Ubiquitin-like protein 5

PF01805
Domain description: Surp module
Occurring in:
  1. Splicing factor 3A subunit 1

PF00160
Domain description: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase E
  2. RING-type E3 ubiquitin-protein ligase PPIL2

PF02184
Domain description: HAT (Half-A-TPR) repeat
Occurring in:
  1. Crooked neck-like protein 1

PF13181
Domain description: Tetratricopeptide repeat
Occurring in:
  1. Pre-mRNA-splicing factor SYF1

PF13921
Domain description: Myb-like DNA-binding domain
Occurring in:
  1. Cell division cycle 5-like protein

PF03660
Domain description: PHF5-like protein
Occurring in:
  1. PHD finger-like domain-containing protein 5A

PF07189
Domain description: Splicing factor 3B subunit 10 (SF3b10)
Occurring in:
  1. Splicing factor 3B subunit 5

PF02731
Domain description: SKIP/SNW domain
Occurring in:
  1. SNW domain-containing protein 1

PF22646
Domain description: PPP2R1A-like HEAT repeat
Occurring in:
  1. Splicing factor 3B subunit 1

PF08920
Domain description: Splicing factor 3B subunit 1
Occurring in:
  1. Splicing factor 3B subunit 1

PF00271
Domain description: Helicase conserved C-terminal domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase

PF18149
Domain description: N-terminal helicase PWI domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase

PF21188
Domain description: Pre-mRNA-splicing helicase BRR2 plug domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase

PF00679
Domain description: Elongation factor G C-terminus
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component

PF03764
Domain description: Elongation factor G, domain IV
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component

PF14492
Domain description: Elongation Factor G, domain III
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component

PF03144
Domain description: Elongation factor Tu domain 2
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component

PF00009
Domain description: Elongation factor Tu GTP binding domain
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component

PF16004
Domain description: 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component

PF12230
Domain description: Pre-mRNA splicing factor PRP21 like protein
Occurring in:
  1. Splicing factor 3A subunit 1

PF01480
Domain description: PWI domain
Occurring in:
  1. Serine/arginine repetitive matrix protein 1

PF14580
Domain description: Leucine-rich repeat
Occurring in:
  1. U2 small nuclear ribonucleoprotein A'

PF13087
Domain description: AAA domain
Occurring in:
  1. RNA helicase aquarius

PF13086
Domain description: AAA domain
Occurring in:
  1. RNA helicase aquarius

PF21144
Domain description: Intron-binding protein aquarius insert domain
Occurring in:
  1. RNA helicase aquarius

PF21143
Domain description: Intron-binding protein aquarius, beta-barrel
Occurring in:
  1. RNA helicase aquarius

PF16399
Domain description: Intron-binding protein aquarius N-terminal
Occurring in:
  1. RNA helicase aquarius

PF04046
Domain description: PSP
Occurring in:
  1. Splicing factor 3B subunit 2

PF04037
Domain description: Domain of unknown function (DUF382)
Occurring in:
  1. Splicing factor 3B subunit 2

PF02037
Domain description: SAP domain
Occurring in:
  1. Splicing factor 3B subunit 2

PF08216
Domain description: Catenin-beta-like, Arm-motif containing nuclear
Occurring in:
  1. Beta-catenin-like protein 1

PF04889
Domain description: Cwf15/Cwc15 cell cycle control protein
Occurring in:
  1. Spliceosome-associated protein CWC15 homolog

PF01125
Domain description: Pre-mRNA-splicing factor BUD31
Occurring in:
  1. Protein BUD31 homolog

PF21369
Domain description: STL11, N-terminal
Occurring in:
  1. Pre-mRNA-splicing factor RBM22

PF12171
Domain description: Zinc-finger double-stranded RNA-binding
Occurring in:
  1. Zinc finger matrin-type protein 2

PF11831
Domain description: pre-mRNA splicing factor component
Occurring in:
  1. Cell division cycle 5-like protein

PF06991
Domain description: Microfibril-associated/Pre-mRNA processing
Occurring in:
  1. Microfibrillar-associated protein 1

PF12871
Domain description: Pre-mRNA-splicing factor 38-associated hydrophilic C-term
Occurring in:
  1. Pre-mRNA-splicing factor 38A

PF03371
Domain description: PRP38 family
Occurring in:
  1. Pre-mRNA-splicing factor 38A

PF16835
Domain description: Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
Occurring in:
  1. Splicing factor 3A subunit 2

PF12874
Domain description: Zinc-finger of C2H2 type
Occurring in:
  1. Splicing factor 3A subunit 2

PF03178
Domain description: CPSF A subunit region
Occurring in:
  1. Splicing factor 3B subunit 3

PF10433
Domain description: Mono-functional DNA-alkylating methyl methanesulfonate N-term
Occurring in:
  1. Splicing factor 3B subunit 3

PF08084
Domain description: PROCT (NUC072) domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF01398
Domain description: JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF12134
Domain description: PRP8 domain IV core
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF10596
Domain description: U6-snRNA interacting domain of PrP8
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF10597
Domain description: U5-snRNA binding site 2 of PrP8
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF10598
Domain description: RNA recognition motif of the spliceosomal PrP8
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF08083
Domain description: PROCN (NUC071) domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF08082
Domain description: PRO8NT (NUC069), PrP8 N-terminal domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8

PF18131
Domain description: KN17 SH3-like C-terminal domain
Occurring in:
  1. DNA/RNA-binding protein KIN17

PF10357
Domain description: Domain of Kin17 curved DNA-binding protein
Occurring in:
  1. DNA/RNA-binding protein KIN17

PF11931
Domain description: SF3a60/Prp9 C-terminal
Occurring in:
  1. Splicing factor 3A subunit 3

PF13297
Domain description: Replication stress response SDE2 C-terminal
Occurring in:
  1. Splicing factor 3A subunit 3

PF16837
Domain description: Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
Occurring in:
  1. Splicing factor 3A subunit 3

PF12108
Domain description: Splicing factor SF3a60 binding domain
Occurring in:
  1. Splicing factor 3A subunit 3

PF09736
Domain description: Pre-mRNA-splicing factor of RES complex
Occurring in:
  1. BUD13 homolog

PF00498
Domain description: FHA domain
Occurring in:
  1. Smad nuclear-interacting protein 1

Rfam RNA families (Rfam)
RF00004
Domain description: U2 spliceosomal RNA
Occurring in:
  1. U2 snRNA
The deposited structure of PDB entry 7abi contains 1 copy of Rfam domain RF00004 (U2 spliceosomal RNA) in U2 snRNA. Showing 1 copy in chain DA [auth 2].

RF00020
Domain description: U5 spliceosomal RNA
Occurring in:
  1. U5 snRNA
The deposited structure of PDB entry 7abi contains 1 copy of Rfam domain RF00020 (U5 spliceosomal RNA) in U5 snRNA. Showing 1 copy in chain TA [auth 5].

RF00026
Domain description: U6 spliceosomal RNA
Occurring in:
  1. U6 snRNA
The deposited structure of PDB entry 7abi contains 1 copy of Rfam domain RF00026 (U6 spliceosomal RNA) in U6 snRNA. Showing 1 copy in chain I [auth 6].

InterPro InterPro annotations
IPR001680
Domain description: WD40 repeat
Occurring in:
  1. Pre-mRNA-processing factor 17
  2. U5 small nuclear ribonucleoprotein 40 kDa protein
  3. Pleiotropic regulator 1
IPR001163
Domain description: Sm domain, eukaryotic/archaea-type
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D2
  2. Small nuclear ribonucleoprotein F
  3. Small nuclear ribonucleoprotein E
  4. Small nuclear ribonucleoprotein G
  5. Small nuclear ribonucleoprotein Sm D3
  6. Small nuclear ribonucleoprotein-associated proteins B and B'
  7. Small nuclear ribonucleoprotein Sm D1
IPR003107
Domain description: HAT (Half-A-TPR) repeat
Occurring in:
  1. Pre-mRNA-splicing factor SYF1
  2. Crooked neck-like protein 1
IPR000504
Domain description: RNA recognition motif domain
Occurring in:
  1. RNA-binding motif protein, X-linked 2
  2. U2 small nuclear ribonucleoprotein B''
  3. Pre-mRNA-splicing factor RBM22
  4. Peptidyl-prolyl cis-trans isomerase E
  5. Splicing factor 3B subunit 4
  6. Splicing factor 3B subunit 6
IPR002130
Domain description: Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase E
  2. RING-type E3 ubiquitin-protein ligase PPIL2
IPR047575
Domain description: Sm domain
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D2
  2. Small nuclear ribonucleoprotein F
  3. Small nuclear ribonucleoprotein E
  4. Small nuclear ribonucleoprotein G
  5. Small nuclear ribonucleoprotein Sm D3
  6. Small nuclear ribonucleoprotein-associated proteins B and B'
  7. Small nuclear ribonucleoprotein Sm D1
IPR010920
Domain description: LSM domain superfamily
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D2
  2. Small nuclear ribonucleoprotein F
  3. Small nuclear ribonucleoprotein E
  4. Small nuclear ribonucleoprotein G
  5. Small nuclear ribonucleoprotein Sm D3
  6. Small nuclear ribonucleoprotein-associated proteins B and B'
  7. Small nuclear ribonucleoprotein Sm D1
IPR027417
Domain description: P-loop containing nucleoside triphosphate hydrolase
Occurring in:
  1. RNA helicase aquarius
  2. 116 kDa U5 small nuclear ribonucleoprotein component
  3. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR011990
Domain description: Tetratricopeptide-like helical domain superfamily
Occurring in:
  1. Pre-mRNA-splicing factor SYF1
  2. Crooked neck-like protein 1
IPR019775
Domain description: WD40 repeat, conserved site
Occurring in:
  1. Pre-mRNA-processing factor 17
  2. U5 small nuclear ribonucleoprotein 40 kDa protein
  3. Pleiotropic regulator 1
IPR012677
Domain description: Nucleotide-binding alpha-beta plait domain superfamily
Occurring in:
  1. RNA-binding motif protein, X-linked 2
  2. U2 small nuclear ribonucleoprotein B''
  3. Pre-mRNA-splicing factor RBM22
  4. Peptidyl-prolyl cis-trans isomerase E
  5. Splicing factor 3B subunit 4
  6. Splicing factor 3B subunit 6
IPR000795
Domain description: Translational (tr)-type GTP-binding domain
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR000061
Domain description: SWAP/Surp
Occurring in:
  1. Splicing factor 3A subunit 1
IPR001748
Domain description: Pre-mRNA-splicing factor BUD31
Occurring in:
  1. Protein BUD31 homolog
IPR020472
Domain description: G-protein beta WD-40 repeat
Occurring in:
  1. U5 small nuclear ribonucleoprotein 40 kDa protein
  2. Pleiotropic regulator 1
IPR015943
Domain description: WD40/YVTN repeat-like-containing domain superfamily
Occurring in:
  1. Pre-mRNA-processing factor 17
  2. U5 small nuclear ribonucleoprotein 40 kDa protein
  3. Splicing factor 3B subunit 3
  4. Pleiotropic regulator 1
IPR035979
Domain description: RNA-binding domain superfamily
Occurring in:
  1. RNA-binding motif protein, X-linked 2
  2. U2 small nuclear ribonucleoprotein B''
  3. Pre-mRNA-splicing factor RBM22
  4. Peptidyl-prolyl cis-trans isomerase E
  5. Splicing factor 3B subunit 4
  6. Splicing factor 3B subunit 6
IPR001650
Domain description: Helicase, C-terminal domain-like
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR019734
Domain description: Tetratricopeptide repeat
Occurring in:
  1. Pre-mRNA-splicing factor SYF1
IPR001005
Domain description: SANT/Myb domain
Occurring in:
  1. Cell division cycle 5-like protein
IPR004179
Domain description: Sec63 domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR014001
Domain description: Helicase superfamily 1/2, ATP-binding domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR000626
Domain description: Ubiquitin-like domain
Occurring in:
  1. Splicing factor 3A subunit 1
  2. Ubiquitin-like protein 5
IPR035967
Domain description: SWAP/Surp superfamily
Occurring in:
  1. Splicing factor 3A subunit 1
IPR029000
Domain description: Cyclophilin-like domain superfamily
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase E
  2. RING-type E3 ubiquitin-protein ligase PPIL2
IPR027141
Domain description: Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D3
  2. Small nuclear ribonucleoprotein Sm D1
IPR027078
Domain description: Small nuclear ribonucleoprotein E
Occurring in:
  1. Small nuclear ribonucleoprotein E
IPR027248
Domain description: Small nuclear ribonucleoprotein Sm D2
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D2
IPR036322
Domain description: WD40-repeat-containing domain superfamily
Occurring in:
  1. Pre-mRNA-processing factor 17
  2. U5 small nuclear ribonucleoprotein 40 kDa protein
  3. Splicing factor 3B subunit 3
  4. Pleiotropic regulator 1
IPR002483
Domain description: PWI domain
Occurring in:
  1. Serine/arginine repetitive matrix protein 1
IPR011989
Domain description: Armadillo-like helical
Occurring in:
  1. Beta-catenin-like protein 1
  2. Splicing factor 3B subunit 1
IPR036236
Domain description: Zinc finger C2H2 superfamily
Occurring in:
  1. DNA/RNA-binding protein KIN17
  2. Splicing factor 3A subunit 2
  3. Zinc finger matrin-type protein 2
IPR000253
Domain description: Forkhead-associated (FHA) domain
Occurring in:
  1. Smad nuclear-interacting protein 1
IPR005345
Domain description: PHF5-like
Occurring in:
  1. PHD finger-like domain-containing protein 5A
IPR009846
Domain description: Splicing factor 3B subunit 5/RDS3 complex subunit 10
Occurring in:
  1. Splicing factor 3B subunit 5
IPR003613
Domain description: U-box domain
Occurring in:
  1. RING-type E3 ubiquitin-protein ligase PPIL2
IPR035892
Domain description: C2 domain superfamily
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR036388
Domain description: Winged helix-like DNA-binding domain superfamily
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR036390
Domain description: Winged helix DNA-binding domain superfamily
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR011545
Domain description: DEAD/DEAH box helicase domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR000640
Domain description: Elongation factor EFG, domain V-like
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR005517
Domain description: Translation elongation factor EFG/EF2, domain IV
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR035647
Domain description: EF-G domain III/V-like
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR035563
Domain description: Splicing factor 3A subunit 1, ubiquitin domain
Occurring in:
  1. Splicing factor 3A subunit 1
IPR029071
Domain description: Ubiquitin-like domain superfamily
Occurring in:
  1. Splicing factor 3A subunit 1
  2. Ubiquitin-like protein 5
IPR020892
Domain description: Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase E
  2. RING-type E3 ubiquitin-protein ligase PPIL2
IPR034168
Domain description: Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase E
IPR034102
Domain description: Small nuclear ribonucleoprotein D1
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D1
IPR017131
Domain description: Small ribonucleoprotein associated, SmB/SmN
Occurring in:
  1. Small nuclear ribonucleoprotein-associated proteins B and B'
IPR034099
Domain description: Small nuclear ribonucleoprotein Sm D3
Occurring in:
  1. Small nuclear ribonucleoprotein Sm D3
IPR034098
Domain description: Small nuclear ribonucleoprotein G
Occurring in:
  1. Small nuclear ribonucleoprotein G
IPR044641
Domain description: Sm-like protein Lsm7/SmG
Occurring in:
  1. Small nuclear ribonucleoprotein G
IPR034100
Domain description: Small nuclear ribonucleoprotein F
Occurring in:
  1. Small nuclear ribonucleoprotein F
IPR016487
Domain description: Sm-like protein Lsm6/SmF
Occurring in:
  1. Small nuclear ribonucleoprotein F
IPR006568
Domain description: PSP, proline-rich
Occurring in:
  1. Splicing factor 3B subunit 2
IPR003034
Domain description: SAP domain
Occurring in:
  1. Splicing factor 3B subunit 2
IPR016024
Domain description: Armadillo-type fold
Occurring in:
  1. Beta-catenin-like protein 1
  2. Splicing factor 3B subunit 1
IPR013180
Domain description: Beta-catenin-like protein 1, N-terminal
Occurring in:
  1. Beta-catenin-like protein 1
IPR018230
Domain description: BUD31/G10-related, conserved site
Occurring in:
  1. Protein BUD31 homolog
IPR000571
Domain description: Zinc finger, CCCH-type
Occurring in:
  1. Pre-mRNA-splicing factor RBM22
IPR045075
Domain description: Pre-mRNA-splicing factor Syf1-like
Occurring in:
  1. Pre-mRNA-splicing factor SYF1
  2. Crooked neck-like protein 1
IPR017930
Domain description: Myb domain
Occurring in:
  1. Cell division cycle 5-like protein
IPR005037
Domain description: Pre-mRNA-splicing factor 38
Occurring in:
  1. Pre-mRNA-splicing factor 38A
IPR003604
Domain description: Matrin/U1-C-like, C2H2-type zinc finger
Occurring in:
  1. Splicing factor 3A subunit 2
  2. Zinc finger matrin-type protein 2
IPR000555
Domain description: JAB1/MPN/MOV34 metalloenzyme domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR021983
Domain description: PRP8 domain IV core
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR012337
Domain description: Ribonuclease H-like superfamily
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR019447
Domain description: DNA/RNA-binding protein Kin17, WH-like domain
Occurring in:
  1. DNA/RNA-binding protein KIN17
IPR000690
Domain description: Matrin/U1-C, C2H2-type zinc finger
Occurring in:
  1. Splicing factor 3A subunit 3
  2. Splicing factor 3A subunit 2
IPR034150
Domain description: SF3B6, RNA recognition motif
Occurring in:
  1. Splicing factor 3B subunit 6
IPR017089
Domain description: Splicing factor 3B, subunit 5
Occurring in:
  1. Splicing factor 3B subunit 5
IPR034159
Domain description: SF3B4, RNA recognition motif 2
Occurring in:
  1. Splicing factor 3B subunit 4
IPR034158
Domain description: SF3B4, RNA recognition motif 1
Occurring in:
  1. Splicing factor 3B subunit 4
IPR004015
Domain description: SKI-interacting protein SKIP, SNW domain
Occurring in:
  1. SNW domain-containing protein 1
IPR017862
Domain description: SKI-interacting protein, SKIP
Occurring in:
  1. SNW domain-containing protein 1
IPR015016
Domain description: Splicing factor 3B subunit 1
Occurring in:
  1. Splicing factor 3B subunit 1
IPR038737
Domain description: Splicing factor 3B subunit 1-like
Occurring in:
  1. Splicing factor 3B subunit 1
IPR044666
Domain description: Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like
Occurring in:
  1. RING-type E3 ubiquitin-protein ligase PPIL2
IPR013083
Domain description: Zinc finger, RING/FYVE/PHD-type
Occurring in:
  1. RING-type E3 ubiquitin-protein ligase PPIL2
IPR026951
Domain description: Peptidyl-prolyl cis-trans isomerase like 2, U-box domain
Occurring in:
  1. RING-type E3 ubiquitin-protein ligase PPIL2
IPR014756
Domain description: Immunoglobulin E-set
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR041094
Domain description: Brr2, N-terminal helicase PWI domain
Occurring in:
  1. U5 small nuclear ribonucleoprotein 200 kDa helicase
IPR035655
Domain description: 116kDa U5 small nuclear ribonucleoprotein component, C-terminal
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR014721
Domain description: Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR020568
Domain description: Ribosomal protein uS5 domain 2-type superfamily
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR041095
Domain description: Elongation Factor G, domain II
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR004161
Domain description: Translation elongation factor EFTu-like, domain 2
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR009000
Domain description: Translation protein, beta-barrel domain superfamily
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR044121
Domain description: Snu114, GTP-binding domain
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR005225
Domain description: Small GTP-binding domain
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR031950
Domain description: 116kDa U5 small nuclear ribonucleoprotein component, N-terminal
Occurring in:
  1. 116 kDa U5 small nuclear ribonucleoprotein component
IPR039732
Domain description: Ubiquitin-like modifier Hub1/Ubl5
Occurring in:
  1. Ubiquitin-like protein 5
IPR022030
Domain description: Splicing factor 3A subunit 1, conserved domain
Occurring in:
  1. Splicing factor 3A subunit 1
IPR045146
Domain description: Splicing factor 3A subunit 1
Occurring in:
  1. Splicing factor 3A subunit 1
IPR016304
Domain description: Peptidyl-prolyl cis-trans isomerase E
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase E
IPR036483
Domain description: PWI domain superfamily
Occurring in:
  1. Serine/arginine repetitive matrix protein 1
IPR003603
Domain description: U2A'/phosphoprotein 32 family A, C-terminal
Occurring in:
  1. U2 small nuclear ribonucleoprotein A'
IPR001611
Domain description: Leucine-rich repeat
Occurring in:
  1. U2 small nuclear ribonucleoprotein A'
IPR044640
Domain description: U2 small nuclear ribonucleoprotein A'
Occurring in:
  1. U2 small nuclear ribonucleoprotein A'
IPR032675
Domain description: Leucine-rich repeat domain superfamily
Occurring in:
  1. U2 small nuclear ribonucleoprotein A'
IPR047187
Domain description: Upf1-like, C-terminal helicase domain
Occurring in:
  1. RNA helicase aquarius
IPR041679
Domain description: DNA2/NAM7 helicase-like, C-terminal
Occurring in:
  1. RNA helicase aquarius
IPR041677
Domain description: DNA2/NAM7 helicase, helicase domain
Occurring in:
  1. RNA helicase aquarius
IPR045055
Domain description: DNA2/NAM7-like helicase
Occurring in:
  1. RNA helicase aquarius
IPR032174
Domain description: RNA helicase aquarius, N-terminal domain
Occurring in:
  1. RNA helicase aquarius
IPR026300
Domain description: CWF11 family
Occurring in:
  1. RNA helicase aquarius
IPR007180
Domain description: Domain of unknown function DUF382
Occurring in:
  1. Splicing factor 3B subunit 2
IPR039678
Domain description: Beta-catenin-like protein 1
Occurring in:
  1. Beta-catenin-like protein 1
IPR006973
Domain description: Pre-mRNA-splicing factor Cwf15/Cwc15
Occurring in:
  1. Spliceosome-associated protein CWC15 homolog
IPR036855
Domain description: Zinc finger, CCCH-type superfamily
Occurring in:
  1. Pre-mRNA-splicing factor RBM22
IPR039171
Domain description: Pre-mRNA-splicing factor Cwc2/Slt11
Occurring in:
  1. Pre-mRNA-splicing factor RBM22
IPR022755
Domain description: Zinc finger, double-stranded RNA binding
Occurring in:
  1. Zinc finger matrin-type protein 2
IPR040107
Domain description: U4/U6.U5 small nuclear ribonucleoprotein component Snu23
Occurring in:
  1. Zinc finger matrin-type protein 2
IPR021786
Domain description: Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal
Occurring in:
  1. Cell division cycle 5-like protein
IPR047240
Domain description: Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domain
Occurring in:
  1. Cell division cycle 5-like protein
IPR009057
Domain description: Homedomain-like superfamily
Occurring in:
  1. Cell division cycle 5-like protein
IPR047242
Domain description: Pre-mRNA splicing factor component CDC5L/Cef1
Occurring in:
  1. Cell division cycle 5-like protein
IPR009730
Domain description: Micro-fibrillar-associated protein 1, C-terminal
Occurring in:
  1. Microfibrillar-associated protein 1
IPR033194
Domain description: Microfibrillar-associated protein 1
Occurring in:
  1. Microfibrillar-associated protein 1
IPR024767
Domain description: Pre-mRNA-splicing factor 38, C-terminal
Occurring in:
  1. Pre-mRNA-splicing factor 38A
IPR045241
Domain description: WD repeat Prp46/PLRG1-like
Occurring in:
  1. Pleiotropic regulator 1
IPR031781
Domain description: SF3A2 domain
Occurring in:
  1. Splicing factor 3A subunit 2
IPR004871
Domain description: Cleavage/polyadenylation specificity factor, A subunit, C-terminal
Occurring in:
  1. Splicing factor 3B subunit 3
IPR018846
Domain description: RSE1/DDB1/CPSF1, first beta-propeller domain
Occurring in:
  1. Splicing factor 3B subunit 3
IPR034562
Domain description: U2 small nuclear ribonucleoprotein B'', RNA recognition motif 2
Occurring in:
  1. U2 small nuclear ribonucleoprotein B''
IPR034564
Domain description: U2 small nuclear ribonucleoprotein B'', RNA recognition motif 1
Occurring in:
  1. U2 small nuclear ribonucleoprotein B''
IPR012984
Domain description: PROCT domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR037518
Domain description: MPN domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR043173
Domain description: Prp8 RNase domain IV, fingers region
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR043172
Domain description: Prp8 RNase domain IV, palm region
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR019580
Domain description: Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR019581
Domain description: Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR042516
Domain description: Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR019582
Domain description: RNA recognition motif, spliceosomal PrP8
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR012592
Domain description: PROCN domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR012591
Domain description: PRO8NT domain
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR027652
Domain description: Pre-mRNA-processing-splicing factor 8
Occurring in:
  1. Pre-mRNA-processing-splicing factor 8
IPR032847
Domain description: Pre-mRNA-processing factor 17
Occurring in:
  1. Pre-mRNA-processing factor 17
IPR041995
Domain description: Kin17, KOW domain
Occurring in:
  1. DNA/RNA-binding protein KIN17
IPR014722
Domain description: Large ribosomal subunit protein uL2, domain 2
Occurring in:
  1. DNA/RNA-binding protein KIN17
IPR041330
Domain description: KN17, SH3-like domain
Occurring in:
  1. DNA/RNA-binding protein KIN17
IPR038254
Domain description: DNA/RNA-binding protein KIN17, WH-like domain superfamily
Occurring in:
  1. DNA/RNA-binding protein KIN17
IPR037321
Domain description: KIN17-like protein
Occurring in:
  1. DNA/RNA-binding protein KIN17
IPR024598
Domain description: Splicing factor SF3a60 /Prp9 subunit, C-terminal
Occurring in:
  1. Splicing factor 3A subunit 3
IPR025086
Domain description: SDE2/SF3A3, SAP domain
Occurring in:
  1. Splicing factor 3A subunit 3
IPR031774
Domain description: SF3A3 domain
Occurring in:
  1. Splicing factor 3A subunit 3
IPR021966
Domain description: Splicing factor SF3a60 binding domain
Occurring in:
  1. Splicing factor 3A subunit 3
IPR018609
Domain description: Bud13
Occurring in:
  1. BUD13 homolog
IPR045844
Domain description: Ist3-like, RNA recognition motif
Occurring in:
  1. RNA-binding motif protein, X-linked 2
IPR008984
Domain description: SMAD/FHA domain superfamily
Occurring in:
  1. Smad nuclear-interacting protein 1

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