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Crystal Structure of GD-26 Fab in Complex with TD Peptide from Haloarcula Marismortui Bacteriorhodopsin I

X-ray diffraction
1.45Å resolution
PDB entry 7doh coloured by chain, front view.
PDB entry 7doh coloured by chain, side view.
PDB entry 7doh coloured by chain, top view.
Source organisms:
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Bacteriorhodopsin-I and IG-light kappa chain and IG-heavy chain
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Multimeric state: hetero trimer
Accessible surface area: 19712.26 Å2
Buried surface area: 4202.66 Å2
Dissociation area: 500.21 Å2
Dissociation energy (ΔGdiss): 4.05 kcal/mol
Dissociation entropy (TΔSdiss): 6.15 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-212324

Macromolecules

Bacteriorhodopsin-I
Chain: I
Length: 9 amino acids
Theoretical weight: 804 Da
Source organism: Haloarcula marismortui
Expression system: Not provided
UniProt:
  • Canonical: Q5UXY6 (Residues: 242-250; Coverage: 4%)
Gene names: bop, rrnAC3161
Bacteriorhodopsin-I in PDB entry 7doh, assembly 1, front view.
Bacteriorhodopsin-I in PDB entry 7doh, assembly 1, side view.
Bacteriorhodopsin-I in PDB entry 7doh, assembly 1, top view.
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GD-26 Fab L-chain
Chain: L
Length: 219 amino acids
Theoretical weight: 24.31 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
InterPro:
GD-26 Fab L-chain in PDB entry 7doh, assembly 1, front view.
GD-26 Fab L-chain in PDB entry 7doh, assembly 1, side view.
GD-26 Fab L-chain in PDB entry 7doh, assembly 1, top view.
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GD-26 Fab H-chain
Chain: H
Length: 227 amino acids
Theoretical weight: 24.49 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
InterPro:
GD-26 Fab H-chain in PDB entry 7doh, assembly 1, front view.
GD-26 Fab H-chain in PDB entry 7doh, assembly 1, side view.
GD-26 Fab H-chain in PDB entry 7doh, assembly 1, top view.
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