7lg5 Citations

Structures and function of the amino acid polymerase cyanophycin synthetase.

Nat Chem Biol 17 1101-1110 (2021)
Related entries: 7lgj, 7lgm, 7lgn, 7lgq

Cited: 11 times
EuropePMC logo PMID: 34385683

Abstract

Cyanophycin is a natural biopolymer produced by a wide range of bacteria, consisting of a chain of poly-L-Asp residues with L-Arg residues attached to the β-carboxylate sidechains by isopeptide bonds. Cyanophycin is synthesized from ATP, aspartic acid and arginine by a homooligomeric enzyme called cyanophycin synthetase (CphA1). CphA1 has domains that are homologous to glutathione synthetases and muramyl ligases, but no other structural information has been available. Here, we present cryo-electron microscopy and X-ray crystallography structures of cyanophycin synthetases from three different bacteria, including cocomplex structures of CphA1 with ATP and cyanophycin polymer analogs at 2.6 Å resolution. These structures reveal two distinct tetrameric architectures, show the configuration of active sites and polymer-binding regions, indicate dynamic conformational changes and afford insight into catalytic mechanism. Accompanying biochemical interrogation of substrate binding sites, catalytic centers and oligomerization interfaces combine with the structures to provide a holistic understanding of cyanophycin biosynthesis.

Articles - 7lg5 mentioned but not cited (1)

  1. A cryptic third active site in cyanophycin synthetase creates primers for polymerization. Sharon I, Pinus S, Grogg M, Moitessier N, Hilvert D, Schmeing TM. Nat Commun 13 3923 (2022)


Reviews citing this publication (1)

  1. Cyanophycin Modifications-Widening the Application Potential. Kwiatos N, Steinbüchel A. Front Bioeng Biotechnol 9 763804 (2021)

Articles citing this publication (9)

  1. First direct evidence for direct cell-membrane penetrations of polycationic homopoly(amino acid)s produced by bacteria. Takeuchi Y, Ushimaru K, Kaneda K, Maruyama C, Ito T, Yamanaka K, Ogasawara Y, Katano H, Kato Y, Dairi T, Hamano Y. Commun Biol 5 1132 (2022)
  2. Cyanophycin Granule Polypeptide: a Neglected High Value-Added Biopolymer, Synthesized in Activated Sludge on a Large Scale. Zou K, Huang Y, Feng B, Qing T, Zhang P, Chen YP. Appl Environ Microbiol 88 e0074222 (2022)
  3. Discovery of cyanophycin dipeptide hydrolase enzymes suggests widespread utility of the natural biopolymer cyanophycin. Sharon I, McKay GA, Nguyen D, Schmeing TM. Proc Natl Acad Sci U S A 120 e2216547120 (2023)
  4. Bioinformatics of cyanophycin metabolism genes and characterization of promiscuous isoaspartyl dipeptidases that catalyze the final step of cyanophycin degradation. Sharon I, Schmeing TM. Sci Rep 13 8314 (2023)
  5. Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase. Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M. Nat Commun 13 5097 (2022)
  6. Structure and function of a hexameric cyanophycin synthetase 2. Markus LMD, Sharon I, Munro K, Grogg M, Hilvert D, Strauss M, Schmeing TM. Protein Sci 32 e4685 (2023)
  7. Cyanophycin modifications for applications in tissue scaffolding. Kwiatos N, Atila D, Puchalski M, Kumaravel V, Steinbüchel A. Appl Microbiol Biotechnol 108 264 (2024)
  8. Structural and functional insights into δ-poly-L-ornithine polymer biosynthesis from Acinetobacter baumannii. Patel KD, Gulick AM. Commun Biol 6 982 (2023)
  9. The Global Influence of Sodium on Cyanobacteria in Resuscitation from Nitrogen Starvation. Burkhardt M, Rapp J, Menzel C, Link H, Forchhammer K. Biology (Basel) 12 159 (2023)